Gene detail

Detail information of GWHGAAZE018657

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002271143.2	PREDICTED: receptor-like protein kinase HAIKU2 [Vitis vinifera]
Swissprot	tr\|Q9LJM4\|IKU2_ARATH	Receptor-like protein kinase HAIKU2 (Precursor)
trEMBL	tr\|F6HBN2\|F6HBN2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49596.1}
TAIR10	AT1G09970.1	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22372600	22375882	-
GWHAAZE00000005	mRNA	22372600	22375882	-
GWHAAZE00000005	exon	22372600	22372832	-
GWHAAZE00000005	exon	22373526	22375648	-
GWHAAZE00000005	exon	22375758	22375882	-
GWHAAZE00000005	CDS	22375758	22375882	-
GWHAAZE00000005	CDS	22373526	22375648	-
GWHAAZE00000005	CDS	22372600	22372832	-

Transcript Sequence
>GWHTAAZE018679 ATGGCAACAAACTCGTCACGCAAATCAATCTCTCTCAACATAACCTCACCGGAACTCTTCCTTTCGATTCCATTTGCGCTATCGAATCGCTTGAGAAAATCTCTTCGAATCGAATTTTTTATCCGGCTACTGAATTTGAACAACAGTGGATTTACCGGACCATTTCCATGGAATTCATTGGAAAGTCTAGTAAATCTCACTTTCTTAAGCCTCGGAGATAATCCATTCGATACTACTTCATCATTTCCTTTAGAAGTAACGAAGCTTGATCAATTGTACTGGCTTTATCTGACTAACTGTAGCATCGAAGGTCGAATTCCCGAAGGGATTGGAAATCTCACTCTCCTGGAAAATCTTGAGCTATCGGATAATCATCTGTTTGGAGAAATTCCATCTGGAATCACTAAACTCACCAGCCTTCGCCAGCTTGAGCTTTACAACAACGCTCTCACTGGAAGATTTCCTGTTGGCTTTGGAAACCTCACCAATCTCATCAATTTCGACGCTTCAAATAATAGTCTCGAAGGTGAAATCTTCGAGCTAAAATCCTTAGCTCAACTCGAATCATTACAACTCTTTGAAAACAAATTCTCCGGAGAAATTCCCGCCGAGTTTGGAGAATTCAAATTCCTTCAAGAGTTCTCAATTTACACAAACAATTTCTCGGGTTTTCTGCCGGAGAAAATCGGATCGTGGTCCGATTTTGTGTGCATCGATGTTTCGGAGAATTTTTTGACCGGTTCTATACCAGTTGATATGTGCAAAAATGGCAAGTTAAGCGATCTGCTCTTGCTTCAGAACAACTTTATTGGTGGATTACCTGAAAATTACGTGTATTGTTCGTCCTTAATTCGTGTTAGATTGAACAATAATTCTCTTTCGGGAACAATCCCTGCCGGAATTTGGATTTTACCGAATTTGAGTATAATTGATCTCACTTTCAATCAGTTTGAAGGGACTATATCATCGAATATATCAAAAGCAGAGTCGTTAGCACAGCTTTTTCTATCGCAAAATCGATTTTCAGGCGAATTACCGGAGGAAATATCCGACGTTGCGTCATTGGTGGCAATTCAACTCGGCTCGAATCAGTTTTCCGGCAAAATTCCGGCGAGGATAGGCCAATTGAAGAGACTAAACAGTCTTCATTTAGAGGAAAATTTATTTTCTGGTACTATACCAGACTCATTAGGCTCGTGTCTTTCTCTCAGCGAAATGAACCTCGCCGGAAACTTTATCTCCGGCCAAATTCCGGCGAGTGTTGGCCTTTTGCGTAGTTTGAACTCCTTAAACATTTCGAATAACAAACTCTCCGGTGAAATTCCTGTGAGTTTGTCGAAGCTGAGGCTAAGCCTTCTCGATTTGTCAAATAACATGTTGACTGGACGCATACCGGAATCTCTATCGATTGAAGCGTTCAAAAGCAGCTTCGCCGGAAACCTAGGTTTATGCAGCGATGGAATAAAAAATTTCCGGCGGTGTACGTCGGCTTCCAGCAGCTCCGGCCACCTAAAAACTGCTTTATCTTGCTTAATAGCAGGGGTGACTGTTTTATTTGTGTCCCTCACTTGCTTCATTATTGTCAAAATGAGGCGAAACGATCACGACCGTCGGATTAAGCAAAACAAATCTTGGGATATGAAACAATTTCATGTACTAAGTTTCAACGAGGAAGAAATACTGAAAGAAATCAAACAGGAAAATATAATTGGCAGTGGCGGATCCGGAGAAGTGTACAAAATCGTCCTCAGAAATGGCACGCAATTAGCGGCGAAACAGATATGGAAATCGGATTCCGGCAACCGGAGGAGTTGCCGGAGCACTGCGGCGATGCTGGGGAAGCAGCGGTCGCCGGAGTACGATGCGGAGGTGGCGACGCTGAGCTGTGTGAGGCACGTGAATGTGGTGAAGCTGTATTGTAGCATAACGAGCGAGGGGTGGGATCTGCTGGTGTACGAGTACATGGTGAATGGGAGTTTGTGGGACCGGATGCACACTTGTCGGAAGATGGAGATGGACTGGGGGGTTAGATATGAGGTGGCGGTGGGGTCGGGTAGGGGATTGGAGTATCTGCACCATGGGTATAATAGACCGGTGATACACCGTGATGTGAAGTCCAGTAATATTCTGTTGGACGAGGATATGAAACCTAGGATTGCGGATTTTGGGTTGGCTAAGGTACTTCGGGCCAACGGGAATTGGGATTCTACTCGTGTTATTGCAGGGACTCACGGCTACATTGCTCCAGAATTTGGAGAGAACAAAGACATAGTCCAGTGGGTATGTAGCGCGATAAGAAACAATGGTAATATGATTGATTTAGTAGATTCGAGTATATCAAAGGAGTTCAAAGAAGATGCGGCCAAAGTTTTGAGAATTGCAATTCATTGCACAATGAAGATCCGCAATAAGGCCTTCGATGAGAATGGTGGTGCAGATGTTAGAAGAAGCTGCGCCTTGATTAAAGAAGATGAAAATTAA

Network for GWHGAAZE018657

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	566	751	1.60E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.133
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.090
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	4.249
	SRR3591710	White floral bud	4.023
	SRR3591711	White flower	11.244
	SRR3591712	Green floral bud	0.434
	SRR3591713	Yellow flower	16.006
SRP173429	SRR8316895	Juvenile bud stage	0.217
	SRR8316896	Juvenile bud stage	0.485
	SRR8316897	Juvenile bud stage	0.630
	SRR8316894	Third green stage	0.224
	SRR8316900	Third green stage	0.134
	SRR8316901	Third green stage	0.305
	SRR8316898	Complete white stage	0.810
	SRR8316899	Complete white stage	0.518
	SRR8316903	Complete white stage	1.634
	SRR8316902	Silver flowering stage	1.378
	SRR8316904	Silver flowering stage	2.498
	SRR8316905	Silver flowering stage	0.516
	SRR8316906	Gold flowering stage	6.887
	SRR8316907	Gold flowering stage	4.754
	SRR8316908	Gold flowering stage	11.667
SRP132670	SRR6706286	Control	0.994
	SRR6706287	Light intensity 50%	0.919
	SRR6706288	Light intensity 20%	0.273
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.052
	CNS0095593	Slightly white alabastrum(diploid) 2	1.103
	CNS0095594	Slightly white alabastrum(diploid) 3	1.403
	CNS0095595	Whole white alabastrum(diploid) 2	1.271
	CNS0095596	Whole white alabastrum(diploid) 3	0.062
	CNS0095597	Whole white alabastrum(diploid) 4	0.319
	CNS0095598	Silvery flower (diploied) 1	0.718
	CNS0095599	Silvery flower (diploied) 2	0.931
	CNS0095600	Silvery flower (diploied) 3	2.693
	CNS0095601	Golden flower (diploid) 1	2.264
	CNS0095602	Golden flower (diploid) 2	10.568
	CNS0095603	Golden flower (diploid) 3	11.184
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.098
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.107
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.084
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.061
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.181
	CNS0095610	Silvery flower (tetraploid) 1	3.817
	CNS0095611	Silvery flower (tetraploid) 2	0.997
	CNS0095612	Silvery flower (tetraploid) 3	0.852
	CNS0095613	Golden flower (tetraploid) 1	1.963
	CNS0095614	Golden flower (tetraploid) 2	8.612
	CNS0095615	Golden flower (tetraploid) 3	3.765
CRA001975	CRR073297	Stem 1	0.910
	CRR073298	Stem 2	0.299
	CRR073299	Stem 3	0.056
	CRR073300	Leaf 1	0.262
	CRR073301	Leaf 2	0.483
	CRR073302	Leaf 3	0.215
	CRR073303	Juvenile bud 1	0.209
	CRR073304	Juvenile bud 2	0.267
	CRR073305	Juvenile bud 3	0.111
	CRR073306	Third green 1	0.165
	CRR073307	Third green 2	0.267
	CRR073308	Third green 3	0.373
	CRR073309	Second white 1	0.432
	CRR073310	Second white 2	0.562
	CRR073311	Second white 3	0.568
	CRR073312	Silver flowering 1	5.572
	CRR073313	Silver flowering 2	3.793
	CRR073314	Silver flowering 3	3.878
	CRR073315	Gold flowering 1	0.021
	CRR073316	Gold flowering 2	0.755
	CRR073317	Gold flowering 3	0.593
	CRR073318	Tawny withering 1	7.502
	CRR073319	Tawny withering 2	31.682
	CRR073320	Tawny withering 3	1.942