Gene detail

Detail information of GWHGAAZE018640

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002306515.2	6.0282E-134	hypothetical protein POPTR_0005s19370g [Populus trichocarpa]
Swissprot	tr\|Q9SUG3\|ITPK2_ARATH	8E-122	Inositol-tetrakisphosphate 1-kinase 2
trEMBL	tr\|B9H6R6\|B9H6R6_POPTR	2E-134	Inositol-tetrakisphosphate 1-kinase {ECO:0000256\|PIRNR:PIRNR038186}
TAIR10	AT4G08170.2	3E-85	Inositol 1,3,4-trisphosphate 5/6-kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22151876	22157616	+
GWHAAZE00000005	mRNA	22151876	22157616	+
GWHAAZE00000005	exon	22151876	22152016	+
GWHAAZE00000005	exon	22152089	22152162	+
GWHAAZE00000005	exon	22152451	22152478	+
GWHAAZE00000005	exon	22152562	22152648	+
GWHAAZE00000005	exon	22153587	22153707	+
GWHAAZE00000005	exon	22154187	22154279	+
GWHAAZE00000005	exon	22154903	22155022	+
GWHAAZE00000005	exon	22155121	22155297	+
GWHAAZE00000005	exon	22156681	22156736	+
GWHAAZE00000005	exon	22156837	22156972	+
GWHAAZE00000005	exon	22157192	22157616	+
GWHAAZE00000005	CDS	22151876	22152016	+
GWHAAZE00000005	CDS	22152089	22152162	+
GWHAAZE00000005	CDS	22152451	22152478	+
GWHAAZE00000005	CDS	22152562	22152648	+
GWHAAZE00000005	CDS	22153587	22153707	+
GWHAAZE00000005	CDS	22154187	22154279	+
GWHAAZE00000005	CDS	22154903	22155022	+
GWHAAZE00000005	CDS	22155121	22155297	+
GWHAAZE00000005	CDS	22156681	22156736	+
GWHAAZE00000005	CDS	22156837	22156972	+
GWHAAZE00000005	CDS	22157192	22157283	+
GWHAAZE00000005	three_prime_UTR	22157284	22157616	+

Transcript Sequence
>GWHTAAZE018662 ATGTCCTCAACAATTTTTGGGTTATGCTTCTCCTGTTGGTTGTGGGATCTTGAGGGGCTGTTGACTTATTTGGGAGTGCCTCTAAGGGAATCATCGGTAGATGGAGTTTGGGGACCTGGATATATAGTCTCATCTCTCCAGAATAGTAGAGAAGCTCATGAGAGATTTGGTCAGACATGGATCATGTGTGTCAGTCTAAGGTTGATGAGGATTGGATTTCCCCGAGAGGAAAACTGGCTGGGGTTTACTTTGTCTAATCTGTCAACATGTTCTAAGACCCGGGTGCTAGCTTGGTGGTTAAGCATCTACCCCTGTATGGGATGGGCACAAGATTACAGGCAAAAACATCCGGAAGTTACTGTCCTTGATCCTCCAGATGCCATCCAACACGTTCACAACCGTCAGTCCATGCTCGAGGATGTGGCTGATCTTAACTTGCCTGATTGCTATGGCAAAGTAGGTGTTCCAACGCAATTGGTTATCACCGAAGACCCGTCATCCATCTCTCAAGAAGTTACTAAAGCAGGACTGAAACTACCATTGGTTGCCAAACCACTGGTTGCAGATGGAAGTGCAAAGTCACATGAACTATTTCTCGCTTACGACCAATCCTCCCTCTCGAAACTTGAACCTCCTTTGGTTTTACAGGAGTTCATCAATCATGGTGGAGTTTTATTTAAAGTTTATATTGTGGGGGAAACTATAAAAGTTGTTAGGCGTTTCTCTCTGCCTGATGTCAGTAAACTTGAGTTGTCAAAAAGTGCTGGTGTATTCCGTTTCCCTAGGGTTTCATGTGCTGCTGCTTCTGCCGAAGATGTTGATATAGATCCTTCAATTGCCGAACTGCCTCCAAGACCTTTGCTCGAGAGGCTTGCTGCTGAGCTTCGCAACCGATTGGGTCTCCGGCTGTTTAATATTGATATGATTCGTGAGAAAGGAACCAGAGATCTATTTTATGTGATCGACATCAACTACTTCCCTGGCAAGTGGAAACCTCTTTTTTTGTTTTTTTGCATTGCAATTCCCACTTTGAGGTATGGGAAAATGCCAGAATATGAGTCTATATTTACAGATTTCCTCCTTGGCCTTGTGAAGAACGATTACAAGAAGCCGCCGGCTCCTTGAGACCTTGACTGTGGAAGTGTCTATCTGGGTTAACTCTGAGAAATGACGCGGATCCATTTTAGCTTTTTATCGAGGCATCATGTACCCTTAATGTGTTATTCAACATATATAATTGGTGCTTTTGTAGGTGAAACGAGCAGATTTTTTGGTTGTTTCCAATGTATAGCAAATGACTTGCAAGAATGAGATTGATTGATCGTCGACGCTATAGGTCAAGATTGACCAATGTACTCACTTTTCCTTGAAGATTTGAAATCGGTAGTATAACCTAGTTGCAAAATGCACTTATATAATTTGTCGACGAAAGGAAGCTTTTCAGTTTGAACATTCTTG

Network for GWHGAAZE018640

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17927.2	Ins134_P3_kin_N	110	128	0.00033
PF05770.12	Ins134_P3_kin	150	361	8.40E-85

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00913	ITPK1	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.437
	SRR3591706	second leaf	11.467
	SRR3591707	mature leaf	15.912
	SRR3591708	Shoot apex	11.494
	SRR3591709	Stem	13.248
	SRR3591710	White floral bud	10.992
	SRR3591711	White flower	19.320
	SRR3591712	Green floral bud	8.348
	SRR3591713	Yellow flower	17.982
SRP173429	SRR8316895	Juvenile bud stage	6.167
	SRR8316896	Juvenile bud stage	10.041
	SRR8316897	Juvenile bud stage	5.685
	SRR8316894	Third green stage	5.161
	SRR8316900	Third green stage	9.428
	SRR8316901	Third green stage	11.280
	SRR8316898	Complete white stage	3.651
	SRR8316899	Complete white stage	14.784
	SRR8316903	Complete white stage	8.498
	SRR8316902	Silver flowering stage	4.906
	SRR8316904	Silver flowering stage	6.888
	SRR8316905	Silver flowering stage	2.867
	SRR8316906	Gold flowering stage	9.824
	SRR8316907	Gold flowering stage	8.629
	SRR8316908	Gold flowering stage	10.924
SRP132670	SRR6706286	Control	5.957
	SRR6706287	Light intensity 50%	6.161
	SRR6706288	Light intensity 20%	6.111
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.303
	CNS0095593	Slightly white alabastrum(diploid) 2	7.454
	CNS0095594	Slightly white alabastrum(diploid) 3	7.439
	CNS0095595	Whole white alabastrum(diploid) 2	6.897
	CNS0095596	Whole white alabastrum(diploid) 3	6.441
	CNS0095597	Whole white alabastrum(diploid) 4	7.221
	CNS0095598	Silvery flower (diploied) 1	14.750
	CNS0095599	Silvery flower (diploied) 2	14.075
	CNS0095600	Silvery flower (diploied) 3	9.370
	CNS0095601	Golden flower (diploid) 1	13.455
	CNS0095602	Golden flower (diploid) 2	11.231
	CNS0095603	Golden flower (diploid) 3	11.109
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.273
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.342
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.711
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.071
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.293
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.701
	CNS0095610	Silvery flower (tetraploid) 1	6.711
	CNS0095611	Silvery flower (tetraploid) 2	9.048
	CNS0095612	Silvery flower (tetraploid) 3	6.623
	CNS0095613	Golden flower (tetraploid) 1	6.901
	CNS0095614	Golden flower (tetraploid) 2	6.912
	CNS0095615	Golden flower (tetraploid) 3	11.142
CRA001975	CRR073297	Stem 1	10.578
	CRR073298	Stem 2	10.405
	CRR073299	Stem 3	8.417
	CRR073300	Leaf 1	10.553
	CRR073301	Leaf 2	10.686
	CRR073302	Leaf 3	6.668
	CRR073303	Juvenile bud 1	7.202
	CRR073304	Juvenile bud 2	5.029
	CRR073305	Juvenile bud 3	7.580
	CRR073306	Third green 1	1.498
	CRR073307	Third green 2	2.615
	CRR073308	Third green 3	2.797
	CRR073309	Second white 1	2.337
	CRR073310	Second white 2	4.130
	CRR073311	Second white 3	2.789
	CRR073312	Silver flowering 1	4.392
	CRR073313	Silver flowering 2	3.051
	CRR073314	Silver flowering 3	4.170
	CRR073315	Gold flowering 1	9.745
	CRR073316	Gold flowering 2	14.114
	CRR073317	Gold flowering 3	6.204
	CRR073318	Tawny withering 1	9.207
	CRR073319	Tawny withering 2	11.257
	CRR073320	Tawny withering 3	11.984