Detail information of GWHGAAZE018576


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009758151.10PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Nicotiana sylvestris]
Swissprottr|O49485|SERA1_ARATH0D-3-phosphoglycerate dehydrogenase 1, chloroplastic (Precursor)
trEMBLtr|A0A068TM02|A0A068TM02_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97216.1}
TAIR10AT4G34200.10D-3-phosphoglycerate dehydrogenase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2135523021359315-
GWHAAZE00000005mRNA2135523021359315-
GWHAAZE00000005exon2135873121359315-
GWHAAZE00000005exon2135706921357445-
GWHAAZE00000005exon2135667421356784-
GWHAAZE00000005exon2135648121356576-
GWHAAZE00000005exon2135523021355901-
GWHAAZE00000005five_prime_UTR2135925421359315-
GWHAAZE00000005CDS2135873121359253-
GWHAAZE00000005CDS2135706921357445-
GWHAAZE00000005CDS2135667421356784-
GWHAAZE00000005CDS2135648121356576-
GWHAAZE00000005CDS2135523021355901-
Transcript Sequence

Network for GWHGAAZE018576

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00389.312-Hacid_dh533626.00E-35
PF02826.202-Hacid_dh_C1553303.70E-63
PF01842.26ACT5205782.10E-07
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00058serA, PHGDH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0006564biological_processL-serine biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0004617molecular_functionphosphoglycerate dehydrogenase activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287molecular_functionNAD binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf70.303
SRR3591706second leaf22.231
SRR3591707mature leaf9.372
SRR3591708Shoot apex62.118
SRR3591709Stem247.902
SRR3591710White floral bud25.487
SRR3591711White flower47.562
SRR3591712Green floral bud92.416
SRR3591713Yellow flower30.336
SRP173429 SRR8316895Juvenile bud stage 59.462
SRR8316896Juvenile bud stage 94.066
SRR8316897Juvenile bud stage 36.502
SRR8316894Third green stage 30.715
SRR8316900Third green stage 96.563
SRR8316901Third green stage 93.995
SRR8316898Complete white stage 5.162
SRR8316899Complete white stage 48.286
SRR8316903Complete white stage 9.191
SRR8316902Silver flowering stage8.048
SRR8316904Silver flowering stage6.191
SRR8316905Silver flowering stage1.623
SRR8316906Gold flowering stage 12.213
SRR8316907Gold flowering stage 13.052
SRR8316908Gold flowering stage 32.940
SRP132670SRR6706286Control62.733
SRR6706287Light intensity 50%68.420
SRR6706288Light intensity 20%76.184
CNP0000432CNS0095592Slightly white alabastrum(diploid) 167.038
CNS0095593Slightly white alabastrum(diploid) 267.080
CNS0095594Slightly white alabastrum(diploid) 363.661
CNS0095595Whole white alabastrum(diploid) 259.275
CNS0095596Whole white alabastrum(diploid) 370.353
CNS0095597Whole white alabastrum(diploid) 449.288
CNS0095598Silvery flower (diploied) 111.709
CNS0095599Silvery flower (diploied) 210.500
CNS0095600Silvery flower (diploied) 315.546
CNS0095601Golden flower (diploid) 16.487
CNS0095602Golden flower (diploid) 29.178
CNS0095603Golden flower (diploid) 39.013
CNS0095604Slightly white alabastrum(tetraploid) 192.862
CNS0095605Slightly white alabastrum(tetraploid) 285.703
CNS0095606Slightly white alabastrum(tetraploid) 3106.470
CNS0095607Whole white alabastrum(tetraploid) 158.081
CNS0095608Whole white alabastrum(tetraploid) 253.600
CNS0095609Whole white alabastrum(tetraploid) 3100.322
CNS0095610Silvery flower (tetraploid) 126.153
CNS0095611Silvery flower (tetraploid) 29.693
CNS0095612Silvery flower (tetraploid) 311.110
CNS0095613Golden flower (tetraploid) 114.143
CNS0095614Golden flower (tetraploid) 233.839
CNS0095615Golden flower (tetraploid) 35.020
CRA001975CRR073297Stem 1100.346
CRR073298Stem 292.652
CRR073299Stem 3106.700
CRR073300Leaf 178.733
CRR073301Leaf 293.829
CRR073302Leaf 3101.987
CRR073303Juvenile bud 186.024
CRR073304Juvenile bud 245.924
CRR073305Juvenile bud 398.865
CRR073306Third green 116.208
CRR073307Third green 29.728
CRR073308Third green 317.971
CRR073309Second white 112.934
CRR073310Second white 211.061
CRR073311Second white 38.460
CRR073312Silver flowering 124.599
CRR073313Silver flowering 242.367
CRR073314Silver flowering 335.652
CRR073315Gold flowering 14.941
CRR073316Gold flowering 25.848
CRR073317Gold flowering 37.347
CRR073318Tawny withering 184.707
CRR073319Tawny withering 255.183
CRR073320Tawny withering 3107.712