Gene detail

Detail information of GWHGAAZE018521

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97144.1	1.9299E-178	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FX85\|PER10_ARATH	9E-151	Peroxidase 10 (Precursor)
trEMBL	tr\|A0A068TMH3\|A0A068TMH3_COFCA	7E-179	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97144.1}
TAIR10	AT1G49570.1	2E-121	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	20653342	20655288	+
GWHAAZE00000005	mRNA	20653342	20655288	+
GWHAAZE00000005	exon	20653342	20653581	+
GWHAAZE00000005	exon	20654309	20654500	+
GWHAAZE00000005	exon	20654594	20654759	+
GWHAAZE00000005	exon	20654879	20655288	+
GWHAAZE00000005	CDS	20653342	20653581	+
GWHAAZE00000005	CDS	20654309	20654500	+
GWHAAZE00000005	CDS	20654594	20654759	+
GWHAAZE00000005	CDS	20654879	20655288	+

Transcript Sequence
>GWHTAAZE018543 ATGGAGCATAAAATGCGCTCCTACATAATTATTAGTATTAATATTATGCCCTTGTTCCTAATTATTATCTCCCATGTTGGTTATATAAATGGCCAATCACTACTTGATTACAATTATTATGATAGAACATGCCCTAATTTGCCTATGATTGTTAGATTTGGTGTTTGGGCAGCTTTGAAGAATGACACCAGGATGCCTGCTTCCCTCCTCCGTTTGCAATTTCATGATTGTTTCGTTAATGGATGTGAAGGTTCAGTCCTTCTTGATGACACTAAAGATTTCAAAGGGGAGAAGAACGCATTGCCCAATCGAAACTCAGTGAGAGGATTTGAAGTGATAGATGCCATTAAAGCAGATGTTGAAAGAGCTTGCCCTTCAACTGTTTCATGTGTTGACATCTTAACTCTTGCTTCAAGAGAAGCTGTCTTTATGTCCGGGGGGCCTTACTGGCCTGTATCACTAGGTCGACGAGATGGCCTAACAGCAAGCCAGAAAGCAGCCAATGAAATGCTACCCTCGCCTATTGAACCTCTCGAAAACATCACCGCCAAGTTCGCAGCAAATGGTCTCGACTTAAAGGATGTTGTAGTCCTTTCAGGGGCACATACATTAGGTTTTGCTCAATGCTTCACCTTCAAGAGGAGATTGTTCAACTTCAAAGAGACCGGCAAGCCGGACCCCACGCTCGAATCATTGTTGCTCTCAAATTTGCAGAGCACTTGTCCAGATGTAGACGAGTCAAATAGCAAGCTCACTCCTCTCGATGTATCAACCACTTATATGTTTGACAACGCGTATTATAAGAACCTGGTCAGTAATAAAGGGCTCCTAGAATCGGATCAAGCCTTAATGGGGAACCCTAAGATGGCTTCGATGGTGTACGATTATAGCATGTACCCTTCTCTTTTTGCAAGTGATTTTGCGGCATCAATGGTGAAGCTTGGGAATGTTGGGGTCCTCACTGGGCAAGCTGGACAAATTAGGAAGAAATGTGGCTCTGTAAATTAA

Network for GWHGAAZE018521

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	55	297	2.50E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.463
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	2.330
	SRR3591709	Stem	12.362
	SRR3591710	White floral bud	0.352
	SRR3591711	White flower	0.263
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.445
	SRR8316896	Juvenile bud stage	1.594
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.992
	SRR8316900	Third green stage	3.096
	SRR8316901	Third green stage	2.059
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.439
	SRR8316903	Complete white stage	0.306
	SRR8316902	Silver flowering stage	0.116
	SRR8316904	Silver flowering stage	0.065
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.418
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	6.057
	SRR6706287	Light intensity 50%	6.063
	SRR6706288	Light intensity 20%	6.669
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.453
	CNS0095593	Slightly white alabastrum(diploid) 2	0.862
	CNS0095594	Slightly white alabastrum(diploid) 3	3.551
	CNS0095595	Whole white alabastrum(diploid) 2	1.085
	CNS0095596	Whole white alabastrum(diploid) 3	0.209
	CNS0095597	Whole white alabastrum(diploid) 4	0.652
	CNS0095598	Silvery flower (diploied) 1	0.681
	CNS0095599	Silvery flower (diploied) 2	0.337
	CNS0095600	Silvery flower (diploied) 3	0.166
	CNS0095601	Golden flower (diploid) 1	0.724
	CNS0095602	Golden flower (diploid) 2	0.908
	CNS0095603	Golden flower (diploid) 3	0.535
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.955
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.089
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.910
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.071
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.047
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.285
	CRR073298	Stem 2	2.873
	CRR073299	Stem 3	2.158
	CRR073300	Leaf 1	0.604
	CRR073301	Leaf 2	1.416
	CRR073302	Leaf 3	1.575
	CRR073303	Juvenile bud 1	0.060
	CRR073304	Juvenile bud 2	0.243
	CRR073305	Juvenile bud 3	0.353
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.256
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.055
	CRR073317	Gold flowering 3	0.042
	CRR073318	Tawny withering 1	0.373
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.028