Detail information of GWHGAAZE018448


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004299937.13.8283E-120PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like [Fragaria vesca subsp. vesca]
Swissprottr|P80269|NDUS8_SOLTU4E-120NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial (Precursor)
trEMBLtr|V7BQC1|V7BQC1_PHAVU4E-120Uncharacterized protein {ECO:0000313|EMBL:ESW20187.1}
TAIR10AT1G79010.11E-85Alpha-helical ferredoxin

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1969239819694387-
GWHAAZE00000005mRNA1969239819694387-
GWHAAZE00000005exon1969239819692493-
GWHAAZE00000005exon1969261919692730-
GWHAAZE00000005exon1969282719692894-
GWHAAZE00000005exon1969397719694090-
GWHAAZE00000005exon1969417519694266-
GWHAAZE00000005exon1969436619694387-
GWHAAZE00000005CDS1969436619694387-
GWHAAZE00000005CDS1969417519694266-
GWHAAZE00000005CDS1969397719694090-
GWHAAZE00000005CDS1969282719692894-
GWHAAZE00000005CDS1969261919692730-
GWHAAZE00000005CDS1969239819692493-
Transcript Sequence

Network for GWHGAAZE018448

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12838.8Fer4_7671212.70E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03941NDUFS8 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Retrograde endocannabinoid signalingmap04723
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016020cellular_componentmembrane
GO:0016651molecular_functionoxidoreductase activity, acting on NAD(P)H
GO:0051539molecular_function4 iron, 4 sulfur cluster binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf129.011
SRR3591706second leaf65.438
SRR3591707mature leaf58.075
SRR3591708Shoot apex108.554
SRR3591709Stem114.344
SRR3591710White floral bud139.730
SRR3591711White flower191.108
SRR3591712Green floral bud131.949
SRR3591713Yellow flower189.872
SRP173429 SRR8316895Juvenile bud stage 97.884
SRR8316896Juvenile bud stage 149.869
SRR8316897Juvenile bud stage 87.936
SRR8316894Third green stage 62.280
SRR8316900Third green stage 231.808
SRR8316901Third green stage 224.563
SRR8316898Complete white stage 128.323
SRR8316899Complete white stage 246.845
SRR8316903Complete white stage 166.518
SRR8316902Silver flowering stage157.512
SRR8316904Silver flowering stage158.154
SRR8316905Silver flowering stage88.367
SRR8316906Gold flowering stage 266.895
SRR8316907Gold flowering stage 301.077
SRR8316908Gold flowering stage 301.216
SRP132670SRR6706286Control258.491
SRR6706287Light intensity 50%257.248
SRR6706288Light intensity 20%257.574
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1139.830
CNS0095593Slightly white alabastrum(diploid) 2149.811
CNS0095594Slightly white alabastrum(diploid) 3134.037
CNS0095595Whole white alabastrum(diploid) 2141.591
CNS0095596Whole white alabastrum(diploid) 3161.159
CNS0095597Whole white alabastrum(diploid) 4135.218
CNS0095598Silvery flower (diploied) 1133.331
CNS0095599Silvery flower (diploied) 2124.043
CNS0095600Silvery flower (diploied) 3232.450
CNS0095601Golden flower (diploid) 1134.096
CNS0095602Golden flower (diploid) 2175.714
CNS0095603Golden flower (diploid) 3182.445
CNS0095604Slightly white alabastrum(tetraploid) 1161.434
CNS0095605Slightly white alabastrum(tetraploid) 2159.114
CNS0095606Slightly white alabastrum(tetraploid) 3161.200
CNS0095607Whole white alabastrum(tetraploid) 1158.506
CNS0095608Whole white alabastrum(tetraploid) 2158.855
CNS0095609Whole white alabastrum(tetraploid) 3180.802
CNS0095610Silvery flower (tetraploid) 1276.851
CNS0095611Silvery flower (tetraploid) 2255.424
CNS0095612Silvery flower (tetraploid) 3218.499
CNS0095613Golden flower (tetraploid) 1191.369
CNS0095614Golden flower (tetraploid) 2216.984
CNS0095615Golden flower (tetraploid) 3192.158
CRA001975CRR073297Stem 1182.571
CRR073298Stem 2172.012
CRR073299Stem 3177.473
CRR073300Leaf 1218.746
CRR073301Leaf 2238.450
CRR073302Leaf 3240.164
CRR073303Juvenile bud 1290.938
CRR073304Juvenile bud 2240.431
CRR073305Juvenile bud 3185.860
CRR073306Third green 1233.509
CRR073307Third green 2248.807
CRR073308Third green 3223.174
CRR073309Second white 1264.709
CRR073310Second white 2247.234
CRR073311Second white 3180.731
CRR073312Silver flowering 1164.350
CRR073313Silver flowering 2150.841
CRR073314Silver flowering 3161.888
CRR073315Gold flowering 1128.309
CRR073316Gold flowering 2134.624
CRR073317Gold flowering 387.489
CRR073318Tawny withering 1222.228
CRR073319Tawny withering 2215.106
CRR073320Tawny withering 3192.954