Gene detail

Detail information of GWHGAAZE018436

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002283855.1	PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Vitis vinifera]
Swissprot	tr\|Q00081\|GLGL1_SOLTU	Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment)
trEMBL	tr\|F6I0L5\|F6I0L5_VITVI	Glucose-1-phosphate adenylyltransferase {ECO:0000256\|RuleBase:RU003565}
TAIR10	AT4G39210.1	Glucose-1-phosphate adenylyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19536880	19540801	+
GWHAAZE00000005	mRNA	19536880	19540801	+
GWHAAZE00000005	exon	19536880	19537101	+
GWHAAZE00000005	exon	19537248	19537370	+
GWHAAZE00000005	exon	19537817	19537987	+
GWHAAZE00000005	exon	19538254	19538346	+
GWHAAZE00000005	exon	19538515	19538598	+
GWHAAZE00000005	exon	19538688	19538743	+
GWHAAZE00000005	exon	19538858	19538951	+
GWHAAZE00000005	exon	19539324	19539509	+
GWHAAZE00000005	exon	19539602	19539682	+
GWHAAZE00000005	exon	19539839	19539925	+
GWHAAZE00000005	exon	19540082	19540186	+
GWHAAZE00000005	exon	19540306	19540412	+
GWHAAZE00000005	exon	19540538	19540598	+
GWHAAZE00000005	exon	19540700	19540801	+
GWHAAZE00000005	CDS	19536880	19537101	+
GWHAAZE00000005	CDS	19537248	19537370	+
GWHAAZE00000005	CDS	19537817	19537987	+
GWHAAZE00000005	CDS	19538254	19538346	+
GWHAAZE00000005	CDS	19538515	19538598	+
GWHAAZE00000005	CDS	19538688	19538743	+
GWHAAZE00000005	CDS	19538858	19538951	+
GWHAAZE00000005	CDS	19539324	19539509	+
GWHAAZE00000005	CDS	19539602	19539682	+
GWHAAZE00000005	CDS	19539839	19539925	+
GWHAAZE00000005	CDS	19540082	19540186	+
GWHAAZE00000005	CDS	19540306	19540412	+
GWHAAZE00000005	CDS	19540538	19540598	+
GWHAAZE00000005	CDS	19540700	19540801	+

Transcript Sequence
>GWHTAAZE018458 ATGGATTCTTGCTGTTTGTCACTGAAAACTGGTACCAATTTGTCAACATTAACAAGACGAGACGACGGGTTTTGGGGAGAGAGGATTAGAGGGAGTCTAAAGAATAGTTTTTGTCTTAATAATCGGTTAAAAAATTGCTTGAGAGCTGAGAAAAATGTGAGGAAGATCAAACCTGGGGTTGCCTTCTCTGTTCTCACAACTGATAATACCAAGGAGACACTGACCATAGAAGCACCATTATTTGAGAGACGAAGGGCCAACCCAAGAAACGTAGCTGCCATCATATTGGGTGGAGGTGCTGGGACTCAACTCTTTCCTCTTACAAGTAGAACCGCAACCCCTGCTGTTCCAGTTGGAGGATGCTACAGACTTATAGACATCCCATTGAGCAACTGCATAAACAGCGGCATAAACAAGATATATGTACTGACTCAGTTCAATTCAGCCTCATTGAATCGTCATATTGCTCGTACGTATTTCGGAAATGGGGTCAACTTTGGGGACGGTTTTGTGGAGGTGTTGGCTGCCACACAAACACCGGGCGAGGCGGGAATGAATTGGTTCCAAGGAACTGCAGATGCTGTGAGGCAATTTACATGGGTATTTGAGGATGCCAGGAACAAGGACATTGACGATATAGTGATCTTGTCTGGGGATCACCTCTATCGTATGGAGTATATGGACTTTGTGCAGAATCACATCAACAGAGATGCTGATATTACAGTTTCATGTGTGCCCGTGGGGAACAGCCGTGCATCAGATTTTGGATTAATGAAGATTGACAGCAGAGGTCAGGTCATCCAATTTGCTGAAAAACCCACGGGTGCTGCTCTGAAAGCAATGCGTGTAGATACCTCTCTACTAGGGTTGTCTCCGCAAGAAGCTGTGGAATCTCCATATATTGCTTCAATGGGAGTATATGTGTTTAGGACAGATATTTTATTGAAGCTTCTGAGGTGGAGATATCCTACATCCAATGACTTTGGATCTGAAATTATCCCTTGTGCTGTGATGGAGCACAACGTCCAAGCATATATATTCAGAGACTACTGGGAGGACATTGGAACGATTAAATCTTTCTATGATGCTAACTTGGCCCTTACAGAAGAGCTGCCGAAGTTTGAATTTTATGACCCAAAGACTCCGTTTTTCACATCTCCTCGATTCTTACCACCAACCAAAATGGATAGATGCCGGATCAAGGATGCAATAATATCACACGGGTGTTTTTTGAGAGAATGTAGCATTCAACATTCCATTGTGGGTGAACGCTCTCGTTTAGACCATGGCGTTGAACTCAAGGACACATTGATGTTGGGGGCAGATTACTATCAAACAGAATCTGAAATTGCATCTCTTCTGGCAGAGGGGAAGGTCCCCATTGGGGTTGGATGTAATAGCAAAATTAGGAACTGCATTATCGACAAGAATGCAAAGATTGGGAAAGATGTGATCATCGTGAATAAAGATGGTGTTAAAGAAGCAGACAGACCAGAGGAAGGATTTTACATTCGATCAGGAATCACCATTGTATTGGAGAAGGCAACGATCAAAGATGGTGCGGTTATATAA

Network for GWHGAAZE018436

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00483.24	NTP_transferase	93	369	1.40E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00975	glgC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520
		Biofilm formation - Escherichia coli	map02026

Gene Ontology

GO term	Ontology	Name
GO:0005978	biological_process	glycogen biosynthetic process
GO:0009058	biological_process	biosynthetic process
GO:0008878	molecular_function	glucose-1-phosphate adenylyltransferase activity
GO:0016779	molecular_function	nucleotidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	257.365
	SRR3591706	second leaf	32.351
	SRR3591707	mature leaf	11.277
	SRR3591708	Shoot apex	69.993
	SRR3591709	Stem	171.809
	SRR3591710	White floral bud	150.645
	SRR3591711	White flower	28.178
	SRR3591712	Green floral bud	151.034
	SRR3591713	Yellow flower	1.784
SRP173429	SRR8316895	Juvenile bud stage	50.240
	SRR8316896	Juvenile bud stage	80.290
	SRR8316897	Juvenile bud stage	37.589
	SRR8316894	Third green stage	61.000
	SRR8316900	Third green stage	199.956
	SRR8316901	Third green stage	156.338
	SRR8316898	Complete white stage	93.016
	SRR8316899	Complete white stage	393.090
	SRR8316903	Complete white stage	141.403
	SRR8316902	Silver flowering stage	20.710
	SRR8316904	Silver flowering stage	31.558
	SRR8316905	Silver flowering stage	14.722
	SRR8316906	Gold flowering stage	6.174
	SRR8316907	Gold flowering stage	14.298
	SRR8316908	Gold flowering stage	4.629
SRP132670	SRR6706286	Control	108.287
	SRR6706287	Light intensity 50%	119.947
	SRR6706288	Light intensity 20%	124.349
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	104.305
	CNS0095593	Slightly white alabastrum(diploid) 2	128.819
	CNS0095594	Slightly white alabastrum(diploid) 3	89.407
	CNS0095595	Whole white alabastrum(diploid) 2	104.981
	CNS0095596	Whole white alabastrum(diploid) 3	82.759
	CNS0095597	Whole white alabastrum(diploid) 4	97.564
	CNS0095598	Silvery flower (diploied) 1	37.659
	CNS0095599	Silvery flower (diploied) 2	49.518
	CNS0095600	Silvery flower (diploied) 3	49.604
	CNS0095601	Golden flower (diploid) 1	11.713
	CNS0095602	Golden flower (diploid) 2	12.539
	CNS0095603	Golden flower (diploid) 3	11.447
	CNS0095604	Slightly white alabastrum(tetraploid) 1	127.169
	CNS0095605	Slightly white alabastrum(tetraploid) 2	102.146
	CNS0095606	Slightly white alabastrum(tetraploid) 3	216.413
	CNS0095607	Whole white alabastrum(tetraploid) 1	108.867
	CNS0095608	Whole white alabastrum(tetraploid) 2	105.988
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.802
	CNS0095610	Silvery flower (tetraploid) 1	34.095
	CNS0095611	Silvery flower (tetraploid) 2	13.130
	CNS0095612	Silvery flower (tetraploid) 3	3.141
	CNS0095613	Golden flower (tetraploid) 1	0.662
	CNS0095614	Golden flower (tetraploid) 2	0.502
	CNS0095615	Golden flower (tetraploid) 3	0.670
CRA001975	CRR073297	Stem 1	70.955
	CRR073298	Stem 2	78.274
	CRR073299	Stem 3	44.543
	CRR073300	Leaf 1	164.329
	CRR073301	Leaf 2	150.018
	CRR073302	Leaf 3	113.120
	CRR073303	Juvenile bud 1	176.526
	CRR073304	Juvenile bud 2	80.417
	CRR073305	Juvenile bud 3	328.270
	CRR073306	Third green 1	8.586
	CRR073307	Third green 2	7.859
	CRR073308	Third green 3	20.706
	CRR073309	Second white 1	0.369
	CRR073310	Second white 2	0.596
	CRR073311	Second white 3	0.378
	CRR073312	Silver flowering 1	0.397
	CRR073313	Silver flowering 2	0.927
	CRR073314	Silver flowering 3	0.032
	CRR073315	Gold flowering 1	10.930
	CRR073316	Gold flowering 2	11.502
	CRR073317	Gold flowering 3	12.931
	CRR073318	Tawny withering 1	24.251
	CRR073319	Tawny withering 2	21.571
	CRR073320	Tawny withering 3	37.948