Gene detail

Detail information of GWHGAAZE018390

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002275411.2	PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Vitis vinifera]
Swissprot	tr\|Q9T0J6\|DUS3L_ARATH	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
trEMBL	tr\|D7U5F6\|D7U5F6_VITVI	tRNA-dihydrouridine(47) synthase [NAD(P)(+)] {ECO:0000256\|RuleBase:RU291113}
TAIR10	AT4G38890.1	FMN-linked oxidoreductases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	18838155	18845111	-
GWHAAZE00000005	mRNA	18838155	18845111	-
GWHAAZE00000005	exon	18838155	18838253	-
GWHAAZE00000005	exon	18838383	18838552	-
GWHAAZE00000005	exon	18840084	18840204	-
GWHAAZE00000005	exon	18840348	18840629	-
GWHAAZE00000005	exon	18840912	18841184	-
GWHAAZE00000005	exon	18841295	18841551	-
GWHAAZE00000005	exon	18841650	18841905	-
GWHAAZE00000005	exon	18842415	18842651	-
GWHAAZE00000005	exon	18842777	18842893	-
GWHAAZE00000005	exon	18844815	18845111	-
GWHAAZE00000005	CDS	18844815	18845111	-
GWHAAZE00000005	CDS	18842777	18842893	-
GWHAAZE00000005	CDS	18842415	18842651	-
GWHAAZE00000005	CDS	18841650	18841905	-
GWHAAZE00000005	CDS	18841295	18841551	-
GWHAAZE00000005	CDS	18840912	18841184	-
GWHAAZE00000005	CDS	18840348	18840629	-
GWHAAZE00000005	CDS	18840084	18840204	-
GWHAAZE00000005	CDS	18838383	18838552	-
GWHAAZE00000005	CDS	18838155	18838253	-

Transcript Sequence
>GWHTAAZE018412 ATGGACGGGTCATCAACGGAGCTCATCGTCGAAGAACAAGTGAGAGTTCTTCCGCCCGACCCACCGGATTCAAAAGTAGACGACGGAAAAGTAAGAGTAGCGGTGGCCGAGCTTTCCCCGGAAGAATTGGCGGCCAAAGCCATAGCTCCAGTCAAGAAAGAATTCCTTCGTCCTCATACTGTAAGACCTACTACCAATGACGAATCCAACGACGTCGCTTCCGATACTAAGCCCACCACCACTCCTGTTCTCAAGGAGAAGAAATCCAAAAGACAAGCCAAAAGAGAACGCCGTCAGGAACAAAAATCGGTGCTTCATCTCTGTCCCGAGGTTGCAAAGAGTGGAACTGTTAGTTCGTGTCGTTACAGTGACAATTGCCGCTTCAGCCACGACTTAGAAGCCTTCAAGGCTCAGAGACCAGCAGATTTGGATGGCAACTGCCCCTTCCTTGGTGATGTAGGGCCTTGCCCTTATGGGCTGGCTTGTAGATTTTCAGGTACACATAAAGATGACGTTTGTGCTGAAACTCAAAATGTTCAGAAGAAGGTCTCTGAAATTAATGGATTGAAGAAAGATGTTCAAAAACTTCTGTGGAAAAACAAAATGAAATTCCCCAAGGCAGATGCTCAACTCAAACTCCTTGGGCTTATGGGTCCGGGAAGTTCGAAAAAGAAATTGGAGGATAATGAAGAAGGCAATACAACTGTTTCTAATGGTTCTCATGCTACCAATGAAAATTGCTGTAGTGAAGTGGTCAGTGACTCAATTAGTACAGTCAAGTGCTCTCCAGAGGTGCTCGAAGAAGATGATAATATGAACCAGCCATTGGCGGCTGATGAACTCAGACCCCTTAAGAAAGCAAAACCCTTGAGTAGTGAAAACAATTGTTCCAGTGAAGTAAACAACGGTGTAACTATCGAGGAGAAAGATTTTGGGAAAAGCTGTTCACAAAATGAATCATTGACTACAATAGATCATATTCCGATGGAAACTGATAAAAGCTTGACATTACACCCACGTGAAAAGAAGCTAATTGATTTCAGTGAAAAGCTGTATCTTGCGCCTTTGACCACAGTTGGGAATCTTCCGTTCCGAAGGGTTTGCAAGGTGTTAGGAGCTGACGTCACGTGTGGGGAAATGGCAATGTGCACTAATCTCTTGCAGGGTCAAGCTTCGGAGTGGGCGTTGCTACGGCGTCATTCATCTGAGGATTTGTTTGGCGTTCAGATTTGTGGGGCATACCCAGACACCGTATCAAGAACCGTTGAACTTATAGATCGGGAATGTACGGTGGATTTCATTGATATAAACATGGGGTGCCCAATTGATATTGTGGTTAATAAGGGCGCTGGTTCTGCTCTTCTTACAAAACCAATGCGCATGAAGAATGTAATACAAGCAGCTTCTCGTACGGTGGATCAACCAATAACTGTGAAGGTGCGAACAGGTTATTTTGAGGGGAGAAACCGCGTTGATAGTGTAATAGCAGATATTAGCAACTGGGGAGCGAGTGCTATAACTATACACGGGCGATCACGACAGCAACGATACAGCAAGCTTGCTGATTGGGAGTACATTTATCAGTGTGCAACAAAGGCCCCCGATGACTTGCAAGTCTTTGGTAATGGTGATATATTTTCCTATTTAGACTGGAACAAGCACAAGCTTGAGTGCCCTAAGCTTTCTACATGCATGATTGCTCGAGGGGCATTGGTTAAGCCCTGGATTTTCACTGAAATCAAGGAACAGAGGCACTGGGATATCAGTTCTGGCGAACGATTGAATATTTTGAAGGATTATGTCCAGTTTGGCCTTCAACATTGGGGTTCTGATTCAAAAGGGGTGGAGACAACTAGGCACTTTCTTTTGGAATGGCTTAGTTACACATACAGATATGTCCCTGTTGGTCTCTTAGATGTTATTCCCCAACGACTGAATTGGCGACCACCTTCATACTTTGGCCGTGATGATCTTGAGACACTAATGGCCTCCGAATCTGCTGCCGACTGGATTAGGATCTCGGAAATGTTACTTGGCAAGGTTCCAGAGGGATTCACATTTTCACCTAAGCATAAATCCAATGCGTTCGACAGAGCAGAAAATGGCTAA

Network for GWHGAAZE018390

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18044.2	zf-CCCH_4	106	131	5.60E-06
PF01207.18	Dus	353	620	9.90E-51

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008033	biological_process	tRNA processing
GO:0055114	biological_process	oxidation-reduction process
GO:0003824	molecular_function	catalytic activity
GO:0017150	molecular_function	tRNA dihydrouridine synthase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.132
	SRR3591706	second leaf	24.777
	SRR3591707	mature leaf	23.611
	SRR3591708	Shoot apex	79.031
	SRR3591709	Stem	34.231
	SRR3591710	White floral bud	28.562
	SRR3591711	White flower	40.954
	SRR3591712	Green floral bud	46.351
	SRR3591713	Yellow flower	25.273
SRP173429	SRR8316895	Juvenile bud stage	36.236
	SRR8316896	Juvenile bud stage	48.741
	SRR8316897	Juvenile bud stage	26.494
	SRR8316894	Third green stage	21.665
	SRR8316900	Third green stage	53.375
	SRR8316901	Third green stage	45.539
	SRR8316898	Complete white stage	9.418
	SRR8316899	Complete white stage	59.799
	SRR8316903	Complete white stage	17.303
	SRR8316902	Silver flowering stage	9.411
	SRR8316904	Silver flowering stage	11.637
	SRR8316905	Silver flowering stage	5.702
	SRR8316906	Gold flowering stage	18.356
	SRR8316907	Gold flowering stage	17.047
	SRR8316908	Gold flowering stage	22.013
SRP132670	SRR6706286	Control	45.615
	SRR6706287	Light intensity 50%	46.913
	SRR6706288	Light intensity 20%	49.880
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.349
	CNS0095593	Slightly white alabastrum(diploid) 2	34.191
	CNS0095594	Slightly white alabastrum(diploid) 3	27.297
	CNS0095595	Whole white alabastrum(diploid) 2	29.152
	CNS0095596	Whole white alabastrum(diploid) 3	29.125
	CNS0095597	Whole white alabastrum(diploid) 4	22.105
	CNS0095598	Silvery flower (diploied) 1	34.932
	CNS0095599	Silvery flower (diploied) 2	24.580
	CNS0095600	Silvery flower (diploied) 3	31.559
	CNS0095601	Golden flower (diploid) 1	25.481
	CNS0095602	Golden flower (diploid) 2	29.415
	CNS0095603	Golden flower (diploid) 3	28.897
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.402
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.128
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.317
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.515
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.621
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.267
	CNS0095610	Silvery flower (tetraploid) 1	32.552
	CNS0095611	Silvery flower (tetraploid) 2	34.448
	CNS0095612	Silvery flower (tetraploid) 3	20.119
	CNS0095613	Golden flower (tetraploid) 1	15.251
	CNS0095614	Golden flower (tetraploid) 2	24.987
	CNS0095615	Golden flower (tetraploid) 3	17.731
CRA001975	CRR073297	Stem 1	57.900
	CRR073298	Stem 2	54.762
	CRR073299	Stem 3	52.476
	CRR073300	Leaf 1	49.233
	CRR073301	Leaf 2	49.017
	CRR073302	Leaf 3	53.684
	CRR073303	Juvenile bud 1	51.067
	CRR073304	Juvenile bud 2	35.419
	CRR073305	Juvenile bud 3	66.415
	CRR073306	Third green 1	3.509
	CRR073307	Third green 2	3.899
	CRR073308	Third green 3	6.311
	CRR073309	Second white 1	5.054
	CRR073310	Second white 2	4.557
	CRR073311	Second white 3	3.830
	CRR073312	Silver flowering 1	3.970
	CRR073313	Silver flowering 2	5.446
	CRR073314	Silver flowering 3	3.701
	CRR073315	Gold flowering 1	21.068
	CRR073316	Gold flowering 2	29.697
	CRR073317	Gold flowering 3	20.539
	CRR073318	Tawny withering 1	32.155
	CRR073319	Tawny withering 2	26.192
	CRR073320	Tawny withering 3	35.115