Detail information of GWHGAAZE018353


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN80909.10hypothetical protein VITISV_016638 [Vitis vinifera]
Swissprottr|Q9LI77|GATA_ARATH8E-22Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03150} (Precursor)
trEMBLtr|F6I120|F6I120_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB60636.1}
TAIR10AT4G34880.14E-152Amidase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1834313618345130-
GWHAAZE00000005mRNA1834313618345130-
GWHAAZE00000005exon1834313618343492-
GWHAAZE00000005exon1834360018343798-
GWHAAZE00000005exon1834390318344145-
GWHAAZE00000005exon1834424118344455-
GWHAAZE00000005exon1834459718345130-
GWHAAZE00000005CDS1834459718345130-
GWHAAZE00000005CDS1834424118344455-
GWHAAZE00000005CDS1834390318344145-
GWHAAZE00000005CDS1834360018343798-
GWHAAZE00000005CDS1834313618343492-
Transcript Sequence

Network for GWHGAAZE018353

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01425.22Amidase524576.10E-69
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01426E3.5.1.4, amiE Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Arginine and proline metabolismmap00330
Phenylalanine metabolismmap00360
Tryptophan metabolismmap00380
Aminobenzoate degradationmap00627
Styrene degradationmap00643

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.482
SRR3591706second leaf19.658
SRR3591707mature leaf19.379
SRR3591708Shoot apex11.018
SRR3591709Stem22.268
SRR3591710White floral bud9.400
SRR3591711White flower4.987
SRR3591712Green floral bud8.460
SRR3591713Yellow flower0.445
SRP173429 SRR8316895Juvenile bud stage 0.622
SRR8316896Juvenile bud stage 0.774
SRR8316897Juvenile bud stage 2.674
SRR8316894Third green stage 0.547
SRR8316900Third green stage 1.310
SRR8316901Third green stage 0.750
SRR8316898Complete white stage 0.467
SRR8316899Complete white stage 2.083
SRR8316903Complete white stage 0.259
SRR8316902Silver flowering stage0.144
SRR8316904Silver flowering stage0.066
SRR8316905Silver flowering stage0.103
SRR8316906Gold flowering stage 0.051
SRR8316907Gold flowering stage 0.078
SRR8316908Gold flowering stage 0.756
SRP132670SRR6706286Control0.650
SRR6706287Light intensity 50%0.708
SRR6706288Light intensity 20%0.548
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.167
CNS0095593Slightly white alabastrum(diploid) 21.222
CNS0095594Slightly white alabastrum(diploid) 31.082
CNS0095595Whole white alabastrum(diploid) 21.079
CNS0095596Whole white alabastrum(diploid) 31.141
CNS0095597Whole white alabastrum(diploid) 40.496
CNS0095598Silvery flower (diploied) 10.727
CNS0095599Silvery flower (diploied) 20.844
CNS0095600Silvery flower (diploied) 30.409
CNS0095601Golden flower (diploid) 10.313
CNS0095602Golden flower (diploid) 20.279
CNS0095603Golden flower (diploid) 30.253
CNS0095604Slightly white alabastrum(tetraploid) 111.482
CNS0095605Slightly white alabastrum(tetraploid) 29.315
CNS0095606Slightly white alabastrum(tetraploid) 320.766
CNS0095607Whole white alabastrum(tetraploid) 18.503
CNS0095608Whole white alabastrum(tetraploid) 26.344
CNS0095609Whole white alabastrum(tetraploid) 34.627
CNS0095610Silvery flower (tetraploid) 12.416
CNS0095611Silvery flower (tetraploid) 25.801
CNS0095612Silvery flower (tetraploid) 32.049
CNS0095613Golden flower (tetraploid) 10.453
CNS0095614Golden flower (tetraploid) 22.165
CNS0095615Golden flower (tetraploid) 30.612
CRA001975CRR073297Stem 11.467
CRR073298Stem 21.317
CRR073299Stem 31.074
CRR073300Leaf 10.821
CRR073301Leaf 20.829
CRR073302Leaf 30.673
CRR073303Juvenile bud 11.551
CRR073304Juvenile bud 20.488
CRR073305Juvenile bud 31.137
CRR073306Third green 10.029
CRR073307Third green 20.021
CRR073308Third green 30.352
CRR073309Second white 10.000
CRR073310Second white 20.085
CRR073311Second white 30.002
CRR073312Silver flowering 10.088
CRR073313Silver flowering 20.067
CRR073314Silver flowering 30.000
CRR073315Gold flowering 13.283
CRR073316Gold flowering 24.362
CRR073317Gold flowering 31.772
CRR073318Tawny withering 11.977
CRR073319Tawny withering 22.733
CRR073320Tawny withering 31.050