Detail information of GWHGAAZE018313


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009620406.14.48289E-86PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis]
Swissprottr|Q9LNT9|ASK4_ARATH2E-70SKP1-like protein 4
trEMBLtr|B6CNU7|B6CNU7_PETHY4E-80SKP1-like protein 2 {ECO:0000313|EMBL:ACA61784.1}
TAIR10AT1G75950.13E-46S phase kinase-associated protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1784086917842499-
GWHAAZE00000005mRNA1784086917842499-
GWHAAZE00000005exon1784086917841042-
GWHAAZE00000005exon1784188917841987-
GWHAAZE00000005exon1784220317842499-
GWHAAZE00000005CDS1784220317842499-
GWHAAZE00000005CDS1784188917841987-
GWHAAZE00000005CDS1784086917841042-
Transcript Sequence

Network for GWHGAAZE018313

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03931.16Skp1_POZ6651.70E-29
PF01466.20Skp11401876.10E-30
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilySKP1

KEGG pathway

KO Enzyme pathway mapID
K03094SKP1, CBF3D Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
Wnt signaling pathwaymap04310
Hedgehog signaling pathway - flymap04341
TGF-beta signaling pathwaymap04350
Cell cyclemap04110
Cell cycle - yeastmap04111
Oocyte meiosismap04114
Circadian rhythmmap04710

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf287.572
SRR3591706second leaf112.376
SRR3591707mature leaf110.250
SRR3591708Shoot apex245.687
SRR3591709Stem300.019
SRR3591710White floral bud331.439
SRR3591711White flower406.760
SRR3591712Green floral bud315.254
SRR3591713Yellow flower321.905
SRP173429 SRR8316895Juvenile bud stage 190.725
SRR8316896Juvenile bud stage 290.025
SRR8316897Juvenile bud stage 137.970
SRR8316894Third green stage 107.298
SRR8316900Third green stage 299.527
SRR8316901Third green stage 309.848
SRR8316898Complete white stage 183.977
SRR8316899Complete white stage 393.165
SRR8316903Complete white stage 266.280
SRR8316902Silver flowering stage203.882
SRR8316904Silver flowering stage223.379
SRR8316905Silver flowering stage122.754
SRR8316906Gold flowering stage 355.580
SRR8316907Gold flowering stage 398.674
SRR8316908Gold flowering stage 361.669
SRP132670SRR6706286Control565.388
SRR6706287Light intensity 50%548.804
SRR6706288Light intensity 20%554.616
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1265.735
CNS0095593Slightly white alabastrum(diploid) 2257.167
CNS0095594Slightly white alabastrum(diploid) 3266.738
CNS0095595Whole white alabastrum(diploid) 2211.679
CNS0095596Whole white alabastrum(diploid) 3206.540
CNS0095597Whole white alabastrum(diploid) 4185.037
CNS0095598Silvery flower (diploied) 1238.651
CNS0095599Silvery flower (diploied) 2252.370
CNS0095600Silvery flower (diploied) 3361.258
CNS0095601Golden flower (diploid) 1265.328
CNS0095602Golden flower (diploid) 2318.723
CNS0095603Golden flower (diploid) 3310.134
CNS0095604Slightly white alabastrum(tetraploid) 1268.531
CNS0095605Slightly white alabastrum(tetraploid) 2259.004
CNS0095606Slightly white alabastrum(tetraploid) 3333.878
CNS0095607Whole white alabastrum(tetraploid) 1190.554
CNS0095608Whole white alabastrum(tetraploid) 2185.936
CNS0095609Whole white alabastrum(tetraploid) 3286.327
CNS0095610Silvery flower (tetraploid) 1397.945
CNS0095611Silvery flower (tetraploid) 2355.156
CNS0095612Silvery flower (tetraploid) 3275.709
CNS0095613Golden flower (tetraploid) 1313.751
CNS0095614Golden flower (tetraploid) 2345.757
CNS0095615Golden flower (tetraploid) 3272.519
CRA001975CRR073297Stem 1310.998
CRR073298Stem 2284.274
CRR073299Stem 3361.561
CRR073300Leaf 1308.415
CRR073301Leaf 2333.544
CRR073302Leaf 3382.909
CRR073303Juvenile bud 1385.713
CRR073304Juvenile bud 2378.745
CRR073305Juvenile bud 3330.961
CRR073306Third green 1416.758
CRR073307Third green 2406.285
CRR073308Third green 3380.352
CRR073309Second white 1364.642
CRR073310Second white 2287.934
CRR073311Second white 3220.821
CRR073312Silver flowering 1228.665
CRR073313Silver flowering 2282.949
CRR073314Silver flowering 3214.131
CRR073315Gold flowering 1192.481
CRR073316Gold flowering 2165.031
CRR073317Gold flowering 3181.055
CRR073318Tawny withering 1316.878
CRR073319Tawny withering 2320.524
CRR073320Tawny withering 3315.712