Detail information of GWHGAAZE018243


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrP48021.1HMDH_CAMAC0RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase; Short=HMG-CoA reductase [Camptotheca acuminata]
Swissprottr|P48021|HMDH_CAMAC03-hydroxy-3-methylglutaryl-coenzyme A reductase
trEMBLtr|A0A022RJZ7|A0A022RJZ7_ERYGU03-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}
TAIR10AT1G76490.10hydroxy methylglutaryl CoA reductase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1702656417028545-
GWHAAZE00000005mRNA1702656417028545-
GWHAAZE00000005exon1702656417027147-
GWHAAZE00000005exon1702727317027454-
GWHAAZE00000005exon1702757217028545-
GWHAAZE00000005CDS1702757217028545-
GWHAAZE00000005CDS1702727317027454-
GWHAAZE00000005CDS1702656417027147-
Transcript Sequence

Network for GWHGAAZE018243

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00368.19HMG-CoA_red1955713.10E-141
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00021HMGCR Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900
AMPK signaling pathwaymap04152
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0008299biological_processisoprenoid biosynthetic process
GO:0015936biological_processcoenzyme A metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0004420molecular_functionhydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0005515molecular_functionprotein binding
GO:0050662molecular_functioncoenzyme binding
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.405
SRR3591706second leaf0.473
SRR3591707mature leaf3.123
SRR3591708Shoot apex2.013
SRR3591709Stem13.575
SRR3591710White floral bud4.154
SRR3591711White flower4.809
SRR3591712Green floral bud4.047
SRR3591713Yellow flower7.788
SRP173429 SRR8316895Juvenile bud stage 1.738
SRR8316896Juvenile bud stage 6.561
SRR8316897Juvenile bud stage 3.851
SRR8316894Third green stage 3.413
SRR8316900Third green stage 2.522
SRR8316901Third green stage 3.312
SRR8316898Complete white stage 3.487
SRR8316899Complete white stage 8.262
SRR8316903Complete white stage 4.216
SRR8316902Silver flowering stage5.815
SRR8316904Silver flowering stage8.921
SRR8316905Silver flowering stage4.508
SRR8316906Gold flowering stage 32.699
SRR8316907Gold flowering stage 13.025
SRR8316908Gold flowering stage 73.835
SRP132670SRR6706286Control8.664
SRR6706287Light intensity 50%8.611
SRR6706288Light intensity 20%4.723
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.984
CNS0095593Slightly white alabastrum(diploid) 27.156
CNS0095594Slightly white alabastrum(diploid) 37.981
CNS0095595Whole white alabastrum(diploid) 24.326
CNS0095596Whole white alabastrum(diploid) 30.781
CNS0095597Whole white alabastrum(diploid) 44.810
CNS0095598Silvery flower (diploied) 117.722
CNS0095599Silvery flower (diploied) 24.554
CNS0095600Silvery flower (diploied) 311.138
CNS0095601Golden flower (diploid) 121.122
CNS0095602Golden flower (diploid) 211.595
CNS0095603Golden flower (diploid) 312.058
CNS0095604Slightly white alabastrum(tetraploid) 10.598
CNS0095605Slightly white alabastrum(tetraploid) 20.442
CNS0095606Slightly white alabastrum(tetraploid) 32.453
CNS0095607Whole white alabastrum(tetraploid) 10.550
CNS0095608Whole white alabastrum(tetraploid) 20.667
CNS0095609Whole white alabastrum(tetraploid) 30.677
CNS0095610Silvery flower (tetraploid) 14.097
CNS0095611Silvery flower (tetraploid) 20.489
CNS0095612Silvery flower (tetraploid) 32.201
CNS0095613Golden flower (tetraploid) 12.867
CNS0095614Golden flower (tetraploid) 210.482
CNS0095615Golden flower (tetraploid) 30.557
CRA001975CRR073297Stem 12.510
CRR073298Stem 21.608
CRR073299Stem 30.322
CRR073300Leaf 11.934
CRR073301Leaf 24.291
CRR073302Leaf 30.793
CRR073303Juvenile bud 11.818
CRR073304Juvenile bud 20.343
CRR073305Juvenile bud 33.930
CRR073306Third green 10.674
CRR073307Third green 20.164
CRR073308Third green 31.803
CRR073309Second white 11.322
CRR073310Second white 21.581
CRR073311Second white 31.507
CRR073312Silver flowering 111.056
CRR073313Silver flowering 212.150
CRR073314Silver flowering 34.894
CRR073315Gold flowering 110.871
CRR073316Gold flowering 222.549
CRR073317Gold flowering 342.808
CRR073318Tawny withering 1280.282
CRR073319Tawny withering 2267.584
CRR073320Tawny withering 337.234