Gene detail

Detail information of GWHGAAZE018206

Functional Annotation

Database	Orthologs	Annotation
Nr	NP_001266057.1	protein argonaute 1A-like [Solanum lycopersicum]
Swissprot	tr\|O04379\|AGO1_ARATH	Protein argonaute 1
trEMBL	tr\|K4C8V0\|K4C8V0_SOLLC	Protein argonaute {ECO:0000256\|RuleBase:RU361178}
TAIR10	AT1G48410.1	Stabilizer of iron transporter SufD / Polynucleotidyl transferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16610285	16617081	+
GWHAAZE00000005	mRNA	16610285	16617081	+
GWHAAZE00000005	exon	16610285	16610983	+
GWHAAZE00000005	exon	16611076	16611284	+
GWHAAZE00000005	exon	16611372	16611521	+
GWHAAZE00000005	exon	16611623	16611756	+
GWHAAZE00000005	exon	16611939	16612048	+
GWHAAZE00000005	exon	16612554	16612660	+
GWHAAZE00000005	exon	16612771	16612909	+
GWHAAZE00000005	exon	16612980	16613096	+
GWHAAZE00000005	exon	16613426	16613533	+
GWHAAZE00000005	exon	16613648	16613719	+
GWHAAZE00000005	exon	16614549	16614671	+
GWHAAZE00000005	exon	16614778	16614937	+
GWHAAZE00000005	exon	16615058	16615347	+
GWHAAZE00000005	exon	16615422	16615564	+
GWHAAZE00000005	exon	16615714	16615776	+
GWHAAZE00000005	exon	16615861	16615924	+
GWHAAZE00000005	exon	16616042	16616177	+
GWHAAZE00000005	exon	16616264	16616337	+
GWHAAZE00000005	exon	16616486	16616580	+
GWHAAZE00000005	exon	16616666	16616697	+
GWHAAZE00000005	exon	16616867	16617081	+
GWHAAZE00000005	CDS	16610285	16610983	+
GWHAAZE00000005	CDS	16611076	16611284	+
GWHAAZE00000005	CDS	16611372	16611521	+
GWHAAZE00000005	CDS	16611623	16611756	+
GWHAAZE00000005	CDS	16611939	16612048	+
GWHAAZE00000005	CDS	16612554	16612660	+
GWHAAZE00000005	CDS	16612771	16612909	+
GWHAAZE00000005	CDS	16612980	16613096	+
GWHAAZE00000005	CDS	16613426	16613533	+
GWHAAZE00000005	CDS	16613648	16613719	+
GWHAAZE00000005	CDS	16614549	16614671	+
GWHAAZE00000005	CDS	16614778	16614937	+
GWHAAZE00000005	CDS	16615058	16615347	+
GWHAAZE00000005	CDS	16615422	16615564	+
GWHAAZE00000005	CDS	16615714	16615776	+
GWHAAZE00000005	CDS	16615861	16615924	+
GWHAAZE00000005	CDS	16616042	16616177	+
GWHAAZE00000005	CDS	16616264	16616337	+
GWHAAZE00000005	CDS	16616486	16616580	+
GWHAAZE00000005	CDS	16616666	16616697	+
GWHAAZE00000005	CDS	16616867	16617081	+

Transcript Sequence
>GWHTAAZE018228 ATGGTAAGGAAGAGGAGAACTGAAGTTCCTGATGGAGGTGAGAGCTCTGAGCCTCAGGAAGCCGGTGGAGGACGTGGCGGTGGTGCTCAAAGGCCTCCAGCTCAGCACCAACAGCAGCAGGGTGGGGGAGGTCGAGGCTGGCCGGCCCAGACTCAGCAAGGTGGTCGTGGAGGATATGGTGCTGGACGTGGTGGTGCACAGCGTGGTGCAATGGCTTCACCACAGTATTATGGTGTGCCTCCTGAGTATCATCAGGGCAGGGGCACTCAGCAACAGCCTCGAGGAGGAGCACCATCCCAGCGCCGTGGTGGCATGGGAGGTGGCCATGGGGTTGGACCTGTTGCTGGTGGACCTCCTAGGCCATCAGTCCCCGAGCTGCACCAAGCAACCCAGCCTCCGCATCAAGCTGGGGTAATGAATCAGCCTATGCCTTACGGGAATCCGGCTGATACTCATTCAGAGGCTGGTTCTTCTTCGTCCCGGCCTGCCGCGCTGGCTCAGGAAGTGTCACAGCAGTTCCAGCAACTTACTGTTGGGCAAGAGGTGGCTTCAAGCCTGGCTATTCAACCTGCGCCAGCCTCAAGCAAGTCAATGAGATTTCCACTTAGGCCAGGCAAGGGTAGCTATGGTATCAGATGTGTTGTAAAGGCCAATCACTTCTTTGCTGAACTCCCTGACAAGGATTTACACCAGTATGATGTCACAATCACCCCTGAGGTCACATCTCGAGGTGTTAACCGTGCTGTTATGGAACAGCTGGTGAAGCTTTACAGAGAATCTCACCTTGGAAAGCGTCTTCCCGCATATGATGGAAGAAAGAGTCTGTATACTGCAGGGCCTCTCCCCTTTGTTACAAAGGAGTTCAAAATCACCCTTCTTGATGAAGATGATGGATCTGGCAGTGCAAGAAGAGAAAGGGAATTTAAAGTTGTGATCAAATTGGCTGCACGTGCTGACTTGCACCATTTAGGAATGTTTTTACAGGGGAGGCAGGCAGATGCCCCTCAGGAAGCTCTTCAGGTTCTTGACATTGTTCTGCGAGAATTGCCAACAACTCGGTATTGTCCTGTGGGTCGTTCCTTTTATTCACCTGATATTGGAAGAAGGCATCCATTGGGTGAGGGATTGGAAAGTTGGCGTGGTTTCTACCAGAGCATTCGTCCAACACAGATGGGTTTGTCTCTGAATATTGATATGTCCTCCACTGCTTTTATCGAGCCACTACCTGTTATCGACTTCGTAACACAGCTTCTGAATAGGGATGTTTCGGCTAGACCATTGTCTGATGCTGATCGCGTGAAGATTAAAAAGGCACTGAGAGGGGTTAAGGTTGAAGTTACGCATCGTGGAAACATGCGAAGAAAGTACCGTATTTCTGGTCTAACATCCCAAACAACACGAGAGCTGACTTTTCCTGTTGATGAAAGAGGGACCATGAAGTCAGTCGTGGAATACTTCCGAGAGACCTATGGGTTTGCCATCCAACACATCCAGTGGCCCTGTCTGCAAGTTGGAAATCAGCAAAGGCCAAATTATTTGCCCATGGAGGTGTGTAAAATTGTGGAGGGGCAAAGGTATTCAAAGAGATTAAATGAGCGGCAAATTACTGCTTTGCTTAAGGTTACCTGTCAGCGTCCGCAGGATAGGGAGCATGATATTCTCAAGACTGTCAATCACAATGCCTATGCACAAGATCCTTATGCTCAAGAATTTGGAATCAAAATTAGTGAGAAGCTAGCATCTGTTGAAGCTCGTATTCTGCCTGCTCCATGGCTTAAATACCACGAAACAGGTCGAGAGAAGGACTGCCTGCCTCAAGTTGGTCAATGGAATATGATGAATAAGAAAATGGTCAATGGAGGAACAGTGAATAGTTGGATTTGCATAAATTTTTCTAGGAATGTGCAAGATACTGTGGCTCGTGGGTTTTGTTATGAGCTAGCAAACATGTGCGCGACTTCTGGCATGGCATTCAATCCTGAACCTGTGCTCCAACCAGCTAGTGCCCGTCCTGATCAGGTAGAGAGAGTGTTGAAGGCTAAATTCCATGAAGCCATCACTAAGCTACAAGCGAAGGAGCTTGACCTGCTGATTGTTATTCTGCCAGACAATAATGGCTCTCTCTATGGCGATTTGAAGCGTATATGTGAGACTGATCTTGGGATTGTTTCCCAGTGTTGCTTGACAAAGCACGTCTTCAGGATGAGCAAACAGTATCTTGCAAATGTGGCCTTGAAAATCAATGTGAAGGTTGGGGGAAGGAATACAGTGCTTGTTGATGCCTTATCAAGGAGGATACCACTAGTGAGCGACCGTCCAACTATCATTTTTGGTGCTGATGTTACCCATCCCCACCCTGGGGAAGATTCGAGCCCCTCAATTGCTGCTGTACGATGTCAACTTAATAATTACAATTGGGTCGTTGCTTCTCAAGATTGGCCAGAGATTACAAAGTATGCTGGCTTGGTTTGTGCTCAAGCTCATCGGCAAGAGCTCATTCAAGATCTGTTCAAGACTTGGCAGGATCCAGCTAGAGGGACCGTGACTGGTGGCATGATCAAGGAACTCCTCATCTCCTTCCGTAGATCAACTGGGCAGAAACCGCAGCGCATTATATTTTACAGGGATGGTGTCAGTGAAGGTCAATTTTATCAAGTTCTGCTTTATGAACTTGATGCCATTCGTAAGGCGTGTGCATCTTTGGAGCCAAATTATCAGCCGCCGGTCACATTTGTCGTGGTTCAGAAACGTCATCATACTAGATTGTTTGCGAACAACCATGCTGACCGTAATTCTGTGGACAGGAGTGGAAATATTTTACCAGGCACAGTTGTAGATTCAAAGATATGTCATCCTACAGAGTTTGACTTCTACTTGTGCAGCCATGCTGGCATTCAGGGAACCAGCCGTCCTGCACATTATCATGTGCTGTGGGATGAGAACAAATTTACGGCGGATGCTCTTCAATCGCTCACGAATAACCTTTGCTATACATATGCTAGGTGCACTCGATCAGTTTCCATTGTGCCACCAGCGTATTATGCCCATCTGGCGGCTTTCCGAGCGAGGTTTTATATGGAGCCAGAGACTTCTGACAGTGGTTCTATGACCAGTGGTGCTCCAGGTAGTCGCATGGGTCCTGGTGGGGGAAGAAGCACGAGGGTACCAGCCCCTAATGCTGCTGTGAGGCCTCTCCCTGCACTCAAGGAGAATGTGAAGAGAGTTATGTTTTATTGTTGA

Network for GWHGAAZE018206

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12764.8	Gly-rich_Ago1	82	193	6.90E-21
PF16486.6	ArgoN	212	346	3.10E-32
PF08699.11	ArgoL1	356	406	4.30E-22
PF02170.23	PAZ	412	537	2.90E-27
PF16488.6	ArgoL2	548	594	1.10E-14
PF16487.6	ArgoMid	605	679	9.10E-09
PF02171.18	Piwi	697	1026	2.60E-111

Protein Sequence

>GWHPAAZE018217
MVRKRRTEVPDGGESSEPQEAGGGRGGGAQRPPAQHQQQQGGGGRGWPAQTQQGGRGGYGAGRGGAQRGAMASPQYYGVPPEYHQGRGTQQQPRGGAPSQRRGGMGGGHGVGPVAGGPPRPSVPELHQATQPPHQAGVMNQPMPYGNPADTHSEAGSSSSRPAALAQEVSQQFQQLTVGQEVASSLAIQPAPASSKSMRFPLRPGKGSYGIRCVVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFVTKEFKITLLDEDDGSGSARREREFKVVIKLAARADLHHLGMFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDIGRRHPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSARPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQTTRELTFPVDERGTMKSVVEYFRETYGFAIQHIQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPQDREHDILKTVNHNAYAQDPYAQEFGIKISEKLASVEARILPAPWLKYHETGREKDCLPQVGQWNMMNKKMVNGGTVNSWICINFSRNVQDTVARGFCYELANMCATSGMAFNPEPVLQPASARPDQVERVLKAKFHEAITKLQAKELDLLIVILPDNNGSLYGDLKRICETDLGIVSQCCLTKHVFRMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVRCQLNNYNWVVASQDWPEITKYAGLVCAQAHRQELIQDLFKTWQDPARGTVTGGMIKELLISFRRSTGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHADRNSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAPGSRMGPGGGRSTRVPAPNAAVRPLPALKENVKRVMFYC

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11593	ELF2C, AGO	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	354.594
	SRR3591706	second leaf	217.228
	SRR3591707	mature leaf	106.477
	SRR3591708	Shoot apex	253.087
	SRR3591709	Stem	330.311
	SRR3591710	White floral bud	177.105
	SRR3591711	White flower	144.008
	SRR3591712	Green floral bud	177.222
	SRR3591713	Yellow flower	89.947
SRP173429	SRR8316895	Juvenile bud stage	122.101
	SRR8316896	Juvenile bud stage	162.830
	SRR8316897	Juvenile bud stage	88.952
	SRR8316894	Third green stage	58.571
	SRR8316900	Third green stage	142.584
	SRR8316901	Third green stage	142.928
	SRR8316898	Complete white stage	39.296
	SRR8316899	Complete white stage	173.980
	SRR8316903	Complete white stage	79.240
	SRR8316902	Silver flowering stage	29.596
	SRR8316904	Silver flowering stage	42.487
	SRR8316905	Silver flowering stage	18.160
	SRR8316906	Gold flowering stage	64.612
	SRR8316907	Gold flowering stage	71.286
	SRR8316908	Gold flowering stage	81.407
SRP132670	SRR6706286	Control	172.079
	SRR6706287	Light intensity 50%	185.595
	SRR6706288	Light intensity 20%	202.291
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	99.094
	CNS0095593	Slightly white alabastrum(diploid) 2	86.997
	CNS0095594	Slightly white alabastrum(diploid) 3	94.984
	CNS0095595	Whole white alabastrum(diploid) 2	98.058
	CNS0095596	Whole white alabastrum(diploid) 3	89.674
	CNS0095597	Whole white alabastrum(diploid) 4	92.171
	CNS0095598	Silvery flower (diploied) 1	103.034
	CNS0095599	Silvery flower (diploied) 2	90.389
	CNS0095600	Silvery flower (diploied) 3	112.870
	CNS0095601	Golden flower (diploid) 1	106.631
	CNS0095602	Golden flower (diploid) 2	139.279
	CNS0095603	Golden flower (diploid) 3	138.352
	CNS0095604	Slightly white alabastrum(tetraploid) 1	124.336
	CNS0095605	Slightly white alabastrum(tetraploid) 2	98.092
	CNS0095606	Slightly white alabastrum(tetraploid) 3	235.599
	CNS0095607	Whole white alabastrum(tetraploid) 1	94.342
	CNS0095608	Whole white alabastrum(tetraploid) 2	70.841
	CNS0095609	Whole white alabastrum(tetraploid) 3	152.463
	CNS0095610	Silvery flower (tetraploid) 1	104.626
	CNS0095611	Silvery flower (tetraploid) 2	105.206
	CNS0095612	Silvery flower (tetraploid) 3	56.097
	CNS0095613	Golden flower (tetraploid) 1	40.231
	CNS0095614	Golden flower (tetraploid) 2	102.519
	CNS0095615	Golden flower (tetraploid) 3	44.820
CRA001975	CRR073297	Stem 1	164.748
	CRR073298	Stem 2	142.535
	CRR073299	Stem 3	160.145
	CRR073300	Leaf 1	183.673
	CRR073301	Leaf 2	148.849
	CRR073302	Leaf 3	147.646
	CRR073303	Juvenile bud 1	147.337
	CRR073304	Juvenile bud 2	88.646
	CRR073305	Juvenile bud 3	203.190
	CRR073306	Third green 1	46.904
	CRR073307	Third green 2	47.854
	CRR073308	Third green 3	66.224
	CRR073309	Second white 1	24.855
	CRR073310	Second white 2	29.307
	CRR073311	Second white 3	30.540
	CRR073312	Silver flowering 1	24.890
	CRR073313	Silver flowering 2	30.494
	CRR073314	Silver flowering 3	23.563
	CRR073315	Gold flowering 1	35.674
	CRR073316	Gold flowering 2	54.192
	CRR073317	Gold flowering 3	32.258
	CRR073318	Tawny withering 1	184.190
	CRR073319	Tawny withering 2	139.140
	CRR073320	Tawny withering 3	177.486