Gene detail

Detail information of GWHGAAZE018199

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006441364.1	1.7148E-108	hypothetical protein CICLE_v10021859mg [Citrus clementina]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	2E-38	Transcription factor MYB44
trEMBL	tr\|A0A067DID9\|A0A067DID9_CITSI	6E-109	Uncharacterized protein {ECO:0000313\|EMBL:KDO42633.1}
TAIR10	AT1G17950.1	4E-70	myb domain protein 52

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16513297	16514316	-
GWHAAZE00000005	mRNA	16513297	16514316	-
GWHAAZE00000005	exon	16513297	16513481	-
GWHAAZE00000005	exon	16513595	16513960	-
GWHAAZE00000005	exon	16514202	16514316	-
GWHAAZE00000005	CDS	16514202	16514316	-
GWHAAZE00000005	CDS	16513595	16513960	-
GWHAAZE00000005	CDS	16513297	16513481	-

Transcript Sequence
>GWHTAAZE018221 ATGTGTACCAGAGGCCATTGGAGGCCTGCTGAGGATGAGAAGCTTCGGGAATTGGTCGAACGCTATGGACCTCATAATTGGAACGCCATAGCCGAAAAGCTACAAGGAAGATCAGGGAAGAGTTGTAGGCTAAGGTGGTTCAATCAATTGGATCCTCGAATCAACCGGACTCCTTTCACGGAAGAGGAAGAGGAGAGGCTACTTGCATCTCACCGTATTCACGGGAATCGATGGGCTATAATTGCTAGACTCTTTCCCGGCCGCACTGACAACGCCGTTAAGAATCACTGGCATGTTATCATGGCTCGCAAATGCAGAGAGCGATCGAGGATGTACGCAAAGAGAGCGGCTCAAACACTTATGAGTGAACGGAAATCTTCCTCTAATAAATACAGTGCACAGATCTACCCCGCTGATCAAAGATTCGAATATCCTTTCACGCATAACCACGATCTTTCTCATCATACGAAGATTGATGAAGGTAGAAGGCAAAAGGTGGAATTTTATGATTTTCTGCAAGTAAATACGGAGTCTAATGGGAGTGAAGTGATAGACCAATCAAGAAAAGAGGATGAGGAGGTGGATCAAGAACAGCAAAGGAAAGCAAGTAGTAGTAGTAATAGTGTTCGATTCATAGATTTCTTATCAGTTCAAGACTCTTCCTAG

Network for GWHGAAZE018199

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.7	Myb_DNA-bind_6	7	67	6.50E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.625
	SRR3591706	second leaf	2.127
	SRR3591707	mature leaf	0.410
	SRR3591708	Shoot apex	1.007
	SRR3591709	Stem	37.831
	SRR3591710	White floral bud	5.189
	SRR3591711	White flower	0.208
	SRR3591712	Green floral bud	25.841
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	7.292
	SRR8316896	Juvenile bud stage	12.576
	SRR8316897	Juvenile bud stage	3.374
	SRR8316894	Third green stage	2.165
	SRR8316900	Third green stage	12.640
	SRR8316901	Third green stage	10.086
	SRR8316898	Complete white stage	0.167
	SRR8316899	Complete white stage	0.621
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.250
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	17.334
	SRR6706287	Light intensity 50%	15.935
	SRR6706288	Light intensity 20%	17.094
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.661
	CNS0095593	Slightly white alabastrum(diploid) 2	1.598
	CNS0095594	Slightly white alabastrum(diploid) 3	11.942
	CNS0095595	Whole white alabastrum(diploid) 2	0.782
	CNS0095596	Whole white alabastrum(diploid) 3	1.281
	CNS0095597	Whole white alabastrum(diploid) 4	1.283
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.172
	CNS0095600	Silvery flower (diploied) 3	0.139
	CNS0095601	Golden flower (diploid) 1	0.085
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.187
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.914
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.964
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.018
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.789
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.386
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.333
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.155
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.143
	CNS0095615	Golden flower (tetraploid) 3	0.133
CRA001975	CRR073297	Stem 1	16.717
	CRR073298	Stem 2	16.514
	CRR073299	Stem 3	9.852
	CRR073300	Leaf 1	2.775
	CRR073301	Leaf 2	3.964
	CRR073302	Leaf 3	7.348
	CRR073303	Juvenile bud 1	0.097
	CRR073304	Juvenile bud 2	0.290
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.018
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.029
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.021
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.198
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.252
	CRR073318	Tawny withering 1	10.108
	CRR073319	Tawny withering 2	9.897
	CRR073320	Tawny withering 3	21.498