Gene detail

Detail information of GWHGAAZE018189

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010936850.1	3.93655E-52	PREDICTED: calmodulin [Elaeis guineensis]
Swissprot	tr\|P27161\|CALM_SOLLC	4E-54	Calmodulin
trEMBL	tr\|Q711J0\|Q711J0_SOLCO	3E-52	Putative calmodulin {ECO:0000313\|EMBL:CAC84563.1}
TAIR10	AT5G21274.1	3E-42	calmodulin 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16377983	16378920	-
GWHAAZE00000005	mRNA	16377983	16378920	-
GWHAAZE00000005	exon	16377983	16378117	-
GWHAAZE00000005	exon	16378228	16378308	-
GWHAAZE00000005	exon	16378795	16378920	-
GWHAAZE00000005	CDS	16378795	16378920	-
GWHAAZE00000005	CDS	16378228	16378308	-
GWHAAZE00000005	CDS	16377983	16378117	-

Transcript Sequence
>GWHTAAZE018211 ATGAAATCTTTGGGGCAGAATCCAACAGAAGATGAGGTGCAATTTATGATCAAAGAAGTTGATGCGGATCACAGTGGTACCATCAACTTCACCGAGTTCCTCAACTTGATGGCCAAAAAAATGAAGGATGATGGTGTAGTGAAGGAGATCAAAGAGGCATTCAAGGTGTTTGATATAGATAAAAGTGGCTTTATATCTGCTGCAGAGATAAAGCAAGTAATGAGTAACTTAGGGCAGAAGTTGAGTGACAAAAATGTGAATAGAATGATTAGAGAAGCAGACATCGACGGCGATGGTCAGATCAATTACGAGGAGTTTGTTAAAATGATGTTTTCCAAGTGA

Network for GWHGAAZE018189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13833.7	EF-hand_8	2	39	4.70E-09
PF13499.7	EF-hand_7	49	110	2.40E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02183	CALM	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway - plant	map04016
		Apelin signaling pathway	map04371
		Calcium signaling pathway	map04020
		Phosphatidylinositol signaling system	map04070
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		C-type lectin receptor signaling pathway	map04625
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		GnRH signaling pathway	map04912
		Estrogen signaling pathway	map04915
		Oxytocin signaling pathway	map04921
		Melanogenesis	map04916
		Renin secretion	map04924
		Aldosterone synthesis and secretion	map04925
		Adrenergic signaling in cardiomyocytes	map04261
		Vascular smooth muscle contraction	map04270
		Salivary secretion	map04970
		Gastric acid secretion	map04971
		Dopaminergic synapse	map04728
		Long-term potentiation	map04720
		Neurotrophin signaling pathway	map04722
		Phototransduction	map04744
		Phototransduction - fly	map04745
		Olfactory transduction	map04740
		Inflammatory mediator regulation of TRP channels	map04750
		Circadian entrainment	map04713
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	251.995
	SRR3591706	second leaf	70.725
	SRR3591707	mature leaf	69.216
	SRR3591708	Shoot apex	162.896
	SRR3591709	Stem	128.435
	SRR3591710	White floral bud	107.239
	SRR3591711	White flower	101.969
	SRR3591712	Green floral bud	86.496
	SRR3591713	Yellow flower	51.600
SRP173429	SRR8316895	Juvenile bud stage	132.561
	SRR8316896	Juvenile bud stage	125.278
	SRR8316897	Juvenile bud stage	108.833
	SRR8316894	Third green stage	31.037
	SRR8316900	Third green stage	79.179
	SRR8316901	Third green stage	106.396
	SRR8316898	Complete white stage	30.165
	SRR8316899	Complete white stage	253.514
	SRR8316903	Complete white stage	54.678
	SRR8316902	Silver flowering stage	16.580
	SRR8316904	Silver flowering stage	21.898
	SRR8316905	Silver flowering stage	10.004
	SRR8316906	Gold flowering stage	22.958
	SRR8316907	Gold flowering stage	21.647
	SRR8316908	Gold flowering stage	8.679
SRP132670	SRR6706286	Control	78.117
	SRR6706287	Light intensity 50%	89.242
	SRR6706288	Light intensity 20%	82.903
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	216.882
	CNS0095593	Slightly white alabastrum(diploid) 2	364.427
	CNS0095594	Slightly white alabastrum(diploid) 3	322.216
	CNS0095595	Whole white alabastrum(diploid) 2	228.613
	CNS0095596	Whole white alabastrum(diploid) 3	78.885
	CNS0095597	Whole white alabastrum(diploid) 4	184.546
	CNS0095598	Silvery flower (diploied) 1	375.300
	CNS0095599	Silvery flower (diploied) 2	260.064
	CNS0095600	Silvery flower (diploied) 3	103.129
	CNS0095601	Golden flower (diploid) 1	293.418
	CNS0095602	Golden flower (diploid) 2	116.422
	CNS0095603	Golden flower (diploid) 3	109.182
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.310
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.066
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.554
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.683
	CNS0095608	Whole white alabastrum(tetraploid) 2	50.856
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.846
	CNS0095610	Silvery flower (tetraploid) 1	47.103
	CNS0095611	Silvery flower (tetraploid) 2	32.501
	CNS0095612	Silvery flower (tetraploid) 3	21.340
	CNS0095613	Golden flower (tetraploid) 1	36.036
	CNS0095614	Golden flower (tetraploid) 2	33.179
	CNS0095615	Golden flower (tetraploid) 3	16.837
CRA001975	CRR073297	Stem 1	58.236
	CRR073298	Stem 2	50.962
	CRR073299	Stem 3	15.161
	CRR073300	Leaf 1	82.144
	CRR073301	Leaf 2	129.598
	CRR073302	Leaf 3	35.100
	CRR073303	Juvenile bud 1	53.258
	CRR073304	Juvenile bud 2	28.181
	CRR073305	Juvenile bud 3	64.045
	CRR073306	Third green 1	9.850
	CRR073307	Third green 2	12.742
	CRR073308	Third green 3	12.054
	CRR073309	Second white 1	55.543
	CRR073310	Second white 2	26.511
	CRR073311	Second white 3	30.000
	CRR073312	Silver flowering 1	42.946
	CRR073313	Silver flowering 2	38.668
	CRR073314	Silver flowering 3	35.049
	CRR073315	Gold flowering 1	20.776
	CRR073316	Gold flowering 2	25.888
	CRR073317	Gold flowering 3	10.896
	CRR073318	Tawny withering 1	37.408
	CRR073319	Tawny withering 2	69.824
	CRR073320	Tawny withering 3	22.051