Detail information of GWHGAAZE018118


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011084502.13.23328E-89PREDICTED: cyclin-dependent kinase D-3 [Sesamum indicum]
Swissprottr|Q9LMT0|CDKD3_ARATH2E-59Cyclin-dependent kinase D-3
trEMBLtr|A0A022PT91|A0A022PT91_ERYGU2E-87Uncharacterized protein {ECO:0000313|EMBL:EYU19011.1}
TAIR10AT1G18040.19E-50cyclin-dependent kinase D1;3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1540221215403115-
GWHAAZE00000005mRNA1540221215403115-
GWHAAZE00000005exon1540221215402275-
GWHAAZE00000005exon1540259015402883-
GWHAAZE00000005exon1540295515403115-
GWHAAZE00000005CDS1540295515403115-
GWHAAZE00000005CDS1540259015402883-
GWHAAZE00000005CDS1540221215402275-
Transcript Sequence

Network for GWHGAAZE018118

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02202CDK7 Basal transcription factors map03022
Nucleotide excision repairmap03420
Cell cyclemap04110

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.432
SRR3591706second leaf25.309
SRR3591707mature leaf22.007
SRR3591708Shoot apex40.575
SRR3591709Stem36.116
SRR3591710White floral bud40.095
SRR3591711White flower51.994
SRR3591712Green floral bud44.705
SRR3591713Yellow flower46.794
SRP173429 SRR8316895Juvenile bud stage 28.516
SRR8316896Juvenile bud stage 32.902
SRR8316897Juvenile bud stage 17.897
SRR8316894Third green stage 15.641
SRR8316900Third green stage 43.555
SRR8316901Third green stage 40.477
SRR8316898Complete white stage 24.292
SRR8316899Complete white stage 53.913
SRR8316903Complete white stage 25.668
SRR8316902Silver flowering stage24.896
SRR8316904Silver flowering stage25.046
SRR8316905Silver flowering stage15.087
SRR8316906Gold flowering stage 43.971
SRR8316907Gold flowering stage 50.905
SRR8316908Gold flowering stage 48.258
SRP132670SRR6706286Control31.315
SRR6706287Light intensity 50%34.136
SRR6706288Light intensity 20%40.481
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.372
CNS0095593Slightly white alabastrum(diploid) 234.364
CNS0095594Slightly white alabastrum(diploid) 332.168
CNS0095595Whole white alabastrum(diploid) 228.805
CNS0095596Whole white alabastrum(diploid) 332.422
CNS0095597Whole white alabastrum(diploid) 417.255
CNS0095598Silvery flower (diploied) 134.046
CNS0095599Silvery flower (diploied) 231.346
CNS0095600Silvery flower (diploied) 343.260
CNS0095601Golden flower (diploid) 134.091
CNS0095602Golden flower (diploid) 242.357
CNS0095603Golden flower (diploid) 335.158
CNS0095604Slightly white alabastrum(tetraploid) 133.381
CNS0095605Slightly white alabastrum(tetraploid) 228.502
CNS0095606Slightly white alabastrum(tetraploid) 346.505
CNS0095607Whole white alabastrum(tetraploid) 124.307
CNS0095608Whole white alabastrum(tetraploid) 227.640
CNS0095609Whole white alabastrum(tetraploid) 336.871
CNS0095610Silvery flower (tetraploid) 148.673
CNS0095611Silvery flower (tetraploid) 242.455
CNS0095612Silvery flower (tetraploid) 344.257
CNS0095613Golden flower (tetraploid) 131.520
CNS0095614Golden flower (tetraploid) 245.774
CNS0095615Golden flower (tetraploid) 341.416
CRA001975CRR073297Stem 142.629
CRR073298Stem 231.220
CRR073299Stem 331.037
CRR073300Leaf 134.815
CRR073301Leaf 239.024
CRR073302Leaf 330.808
CRR073303Juvenile bud 129.341
CRR073304Juvenile bud 229.450
CRR073305Juvenile bud 342.596
CRR073306Third green 123.292
CRR073307Third green 224.957
CRR073308Third green 321.528
CRR073309Second white 128.760
CRR073310Second white 234.566
CRR073311Second white 324.234
CRR073312Silver flowering 128.974
CRR073313Silver flowering 223.624
CRR073314Silver flowering 326.863
CRR073315Gold flowering 116.322
CRR073316Gold flowering 223.801
CRR073317Gold flowering 314.035
CRR073318Tawny withering 137.140
CRR073319Tawny withering 248.522
CRR073320Tawny withering 337.860