Gene detail

Detail information of GWHGAAZE018097

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278560.1	0	PREDICTED: AMSH-like ubiquitin thioesterase 1 [Vitis vinifera]
Swissprot	tr\|Q8VYB5\|AMSH1_ARATH	0	AMSH-like ubiquitin thioesterase 1
trEMBL	tr\|D7SJ09\|D7SJ09_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15470.3}
TAIR10	AT1G48790.1	6E-149	associated molecule with the SH3 domain of STAM 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15051213	15059078	+
GWHAAZE00000005	mRNA	15051213	15059078	+
GWHAAZE00000005	exon	15051213	15051537	+
GWHAAZE00000005	exon	15054158	15054349	+
GWHAAZE00000005	exon	15054507	15054601	+
GWHAAZE00000005	exon	15056113	15056218	+
GWHAAZE00000005	exon	15056293	15056339	+
GWHAAZE00000005	exon	15056454	15056793	+
GWHAAZE00000005	exon	15056997	15057086	+
GWHAAZE00000005	exon	15057180	15057242	+
GWHAAZE00000005	exon	15057320	15057394	+
GWHAAZE00000005	exon	15058211	15058273	+
GWHAAZE00000005	exon	15058746	15058798	+
GWHAAZE00000005	exon	15058904	15059078	+
GWHAAZE00000005	five_prime_UTR	15051213	15051417	+
GWHAAZE00000005	CDS	15051418	15051537	+
GWHAAZE00000005	CDS	15054158	15054349	+
GWHAAZE00000005	CDS	15054507	15054601	+
GWHAAZE00000005	CDS	15056113	15056218	+
GWHAAZE00000005	CDS	15056293	15056339	+
GWHAAZE00000005	CDS	15056454	15056793	+
GWHAAZE00000005	CDS	15056997	15057086	+
GWHAAZE00000005	CDS	15057180	15057242	+
GWHAAZE00000005	CDS	15057320	15057394	+
GWHAAZE00000005	CDS	15058211	15058273	+
GWHAAZE00000005	CDS	15058746	15058798	+
GWHAAZE00000005	CDS	15058904	15059078	+

Transcript Sequence
>GWHTAAZE018119 ACCTTTATAATAACGAGTTTCCATCTTTACCCTGACAGAAGTCACAGAATAGAAGAGGCGTGAATAATGCCTGCCCCCTCTTTCGTTTGCGTTGTTTAACCTCAAATGCTCAACTCCCATCCCCTGGGTCTCTGCGCTAACACATGTATGTATGTATAATTGTGAGTTGTAGATTCAGTTTGATAATTTGGTTAGTATAAAGAGGATGAGGTCTTCTTCTACGGGTGGACTAATCAACATCAGCTTCAGTGCTCAGAAAGTCGATGTCGATAATCGTATTTCTCTCCGATTTTACAACCGGATCGCTCATAATATCCTCAAACAGAAATTACTGAATGCCCTGAGTGAGCTGGAGAAGTTGAAGCCAGCAGTCAAACAGAAAATTGATGAACTAAACAAAAAGCATGCATATCAAGCAGATGGGTGGGCCCATCCTCGTCAGAACAATCTTGTGGATTCTTCACTGGAATGGCCTTCTGTTCAAAAGAAAAATATGAATAATTATGCTTTAACTAAGACAACACAACCTGCTACTCGAGAATATGTATATTATGGCCCGAGCACGCAGCAGTTCTCACTTGCCAAGCCAGTGGAAGAGCAATTCCGCCGATTCTCTCTTAGTATCCCTCGCCCAACGGAGGAAACCCTTTCCAGACATTCCATTTTGGGGCCAAATGGACTTCATGGGCAGTGTCAACATCCCAGTACTAATATTGGGGTCAATTATCCAAGCAATGTGGACCTAACACCAGTTGAAATCCCAAGGGAGCGCAGCCTGTGGCAATCTATCGAAGATGAAGTTTTGACAAAAAAAGATTGTAGCAACTCAGAACTCAAAAGATCAAGTGTGGAGTCAATTCTTTCCCCAAAAGATGATAATCAGATACATAAAGCTGAAGAACCTGGTTCCTTGATTTCCTTTGAAACAATAGAAATACCTCTTCAAGCTAACATTATCAGACAGCCTTCTCCTCCTCCTGTTCTAGCAGATGTACAAGATTTGATACCTACGCCATCTCCCCTGACTACTGAGACAGAATATAGAGCTGAAAGTTCCATGTCTGAGGGTTTAGTTTGTTCCGAATCTTCGCTGGAATTGCACATTCCAACGTCAGTGATGAAAAGCTTCATGAATATGGCAAAGTCAAATACGGACAAGAATTTAGAAACATGTGGTATTCTTGCAGGGTCACTTAAAAAACGGAAATTTTATATTACTGCTCTTATCATTCCAAAGCAAGAATCAACTTCTAACACATGTCAGACGACAAATGAGGAGGAAATATTTGAAGTGCAGGATAAGCAATCGCTCTTCCCCCTAGGGTGGATTCATACGCATCCCACACAATCTTGTTTCATGTCATCAGTTGATGTTCACACCCATTACTCATATCAGATCATGTTGCCCGAAGCCATTGCAATTGTCATGGCACCGCGAGATAGTTCGAGAACCCATGGCATTTTTCGGTTAACTACTCCAGGTGGCATGGGGGTCATAAGACACTGCCCACATCGTGGTTTTCATTCACATGACACACCCTCCGATGGTGGTCCAATTTACGATCAATGTACAGATGTTTACATGAATCCCAACTTAAAATTCGACATCATTGATCTTCGGTGA

Network for GWHGAAZE018097

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01398.22	JAB	294	401	1.60E-19

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	JAMM

KEGG pathway

KO	Enzyme	pathway	mapID
K11866	STAMBP, AMSH	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.955
	SRR3591706	second leaf	20.984
	SRR3591707	mature leaf	24.022
	SRR3591708	Shoot apex	22.649
	SRR3591709	Stem	35.821
	SRR3591710	White floral bud	13.923
	SRR3591711	White flower	26.072
	SRR3591712	Green floral bud	16.724
	SRR3591713	Yellow flower	32.670
SRP173429	SRR8316895	Juvenile bud stage	15.395
	SRR8316896	Juvenile bud stage	19.179
	SRR8316897	Juvenile bud stage	9.186
	SRR8316894	Third green stage	7.183
	SRR8316900	Third green stage	14.997
	SRR8316901	Third green stage	16.029
	SRR8316898	Complete white stage	7.117
	SRR8316899	Complete white stage	23.686
	SRR8316903	Complete white stage	12.777
	SRR8316902	Silver flowering stage	13.579
	SRR8316904	Silver flowering stage	21.388
	SRR8316905	Silver flowering stage	10.000
	SRR8316906	Gold flowering stage	44.680
	SRR8316907	Gold flowering stage	37.392
	SRR8316908	Gold flowering stage	44.001
SRP132670	SRR6706286	Control	13.565
	SRR6706287	Light intensity 50%	12.878
	SRR6706288	Light intensity 20%	13.430
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.594
	CNS0095593	Slightly white alabastrum(diploid) 2	10.462
	CNS0095594	Slightly white alabastrum(diploid) 3	9.735
	CNS0095595	Whole white alabastrum(diploid) 2	8.750
	CNS0095596	Whole white alabastrum(diploid) 3	6.715
	CNS0095597	Whole white alabastrum(diploid) 4	6.677
	CNS0095598	Silvery flower (diploied) 1	11.094
	CNS0095599	Silvery flower (diploied) 2	9.869
	CNS0095600	Silvery flower (diploied) 3	19.118
	CNS0095601	Golden flower (diploid) 1	13.241
	CNS0095602	Golden flower (diploid) 2	20.037
	CNS0095603	Golden flower (diploid) 3	19.577
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.126
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.671
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.757
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.665
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.754
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.695
	CNS0095610	Silvery flower (tetraploid) 1	20.996
	CNS0095611	Silvery flower (tetraploid) 2	19.032
	CNS0095612	Silvery flower (tetraploid) 3	21.490
	CNS0095613	Golden flower (tetraploid) 1	13.007
	CNS0095614	Golden flower (tetraploid) 2	18.027
	CNS0095615	Golden flower (tetraploid) 3	25.991
CRA001975	CRR073297	Stem 1	13.140
	CRR073298	Stem 2	14.436
	CRR073299	Stem 3	10.640
	CRR073300	Leaf 1	11.970
	CRR073301	Leaf 2	13.196
	CRR073302	Leaf 3	8.185
	CRR073303	Juvenile bud 1	8.674
	CRR073304	Juvenile bud 2	6.678
	CRR073305	Juvenile bud 3	8.300
	CRR073306	Third green 1	10.569
	CRR073307	Third green 2	5.523
	CRR073308	Third green 3	8.752
	CRR073309	Second white 1	11.211
	CRR073310	Second white 2	20.656
	CRR073311	Second white 3	20.224
	CRR073312	Silver flowering 1	16.556
	CRR073313	Silver flowering 2	12.350
	CRR073314	Silver flowering 3	11.468
	CRR073315	Gold flowering 1	5.982
	CRR073316	Gold flowering 2	9.984
	CRR073317	Gold flowering 3	3.782
	CRR073318	Tawny withering 1	10.603
	CRR073319	Tawny withering 2	11.343
	CRR073320	Tawny withering 3	8.889