Detail information of GWHGAAZE018036


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007210538.19.84259E-65hypothetical protein PRUPE_ppa012736mg [Prunus persica]
Swissprottr|Q9LEY9|NHP2_ARATH3E-56H/ACA ribonucleoprotein complex subunit 2-like protein
trEMBLtr|M5WD97|M5WD97_PRUPE4E-65Uncharacterized protein {ECO:0000313|EMBL:EMJ11737.1}
TAIR10AT5G08180.27E-45Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1392103713923068-
GWHAAZE00000005mRNA1392103713923068-
GWHAAZE00000005exon1392300113923068-
GWHAAZE00000005exon1392237213922477-
GWHAAZE00000005exon1392103713921390-
GWHAAZE00000005CDS1392300113923068-
GWHAAZE00000005CDS1392237213922477-
GWHAAZE00000005CDS1392122913921390-
GWHAAZE00000005three_prime_UTR1392103713921228-
Transcript Sequence

Network for GWHGAAZE018036

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01248.27Ribosomal_L7Ae4773.80E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11129NHP2, NOLA2 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf96.714
SRR3591706second leaf37.236
SRR3591707mature leaf24.545
SRR3591708Shoot apex169.852
SRR3591709Stem54.226
SRR3591710White floral bud40.800
SRR3591711White flower74.990
SRR3591712Green floral bud109.002
SRR3591713Yellow flower50.475
SRP173429 SRR8316895Juvenile bud stage 43.823
SRR8316896Juvenile bud stage 53.791
SRR8316897Juvenile bud stage 33.943
SRR8316894Third green stage 21.324
SRR8316900Third green stage 88.583
SRR8316901Third green stage 63.784
SRR8316898Complete white stage 5.498
SRR8316899Complete white stage 58.123
SRR8316903Complete white stage 11.367
SRR8316902Silver flowering stage10.769
SRR8316904Silver flowering stage10.869
SRR8316905Silver flowering stage3.266
SRR8316906Gold flowering stage 13.908
SRR8316907Gold flowering stage 13.845
SRR8316908Gold flowering stage 21.977
SRP132670SRR6706286Control59.074
SRR6706287Light intensity 50%56.620
SRR6706288Light intensity 20%60.092
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1104.140
CNS0095593Slightly white alabastrum(diploid) 2147.405
CNS0095594Slightly white alabastrum(diploid) 3103.958
CNS0095595Whole white alabastrum(diploid) 2102.927
CNS0095596Whole white alabastrum(diploid) 3126.290
CNS0095597Whole white alabastrum(diploid) 481.861
CNS0095598Silvery flower (diploied) 158.498
CNS0095599Silvery flower (diploied) 258.407
CNS0095600Silvery flower (diploied) 339.046
CNS0095601Golden flower (diploid) 148.977
CNS0095602Golden flower (diploid) 237.443
CNS0095603Golden flower (diploid) 331.607
CNS0095604Slightly white alabastrum(tetraploid) 191.306
CNS0095605Slightly white alabastrum(tetraploid) 2103.291
CNS0095606Slightly white alabastrum(tetraploid) 3128.328
CNS0095607Whole white alabastrum(tetraploid) 162.517
CNS0095608Whole white alabastrum(tetraploid) 259.007
CNS0095609Whole white alabastrum(tetraploid) 389.251
CNS0095610Silvery flower (tetraploid) 152.266
CNS0095611Silvery flower (tetraploid) 242.796
CNS0095612Silvery flower (tetraploid) 326.440
CNS0095613Golden flower (tetraploid) 130.531
CNS0095614Golden flower (tetraploid) 238.647
CNS0095615Golden flower (tetraploid) 313.194
CRA001975CRR073297Stem 182.962
CRR073298Stem 278.959
CRR073299Stem 396.954
CRR073300Leaf 171.907
CRR073301Leaf 289.020
CRR073302Leaf 3114.561
CRR073303Juvenile bud 194.047
CRR073304Juvenile bud 242.741
CRR073305Juvenile bud 361.049
CRR073306Third green 12.491
CRR073307Third green 25.077
CRR073308Third green 37.324
CRR073309Second white 110.386
CRR073310Second white 27.797
CRR073311Second white 35.972
CRR073312Silver flowering 18.057
CRR073313Silver flowering 28.569
CRR073314Silver flowering 37.067
CRR073315Gold flowering 190.977
CRR073316Gold flowering 281.961
CRR073317Gold flowering 381.098
CRR073318Tawny withering 1109.044
CRR073319Tawny withering 296.147
CRR073320Tawny withering 3124.390