Detail information of GWHGAAZE018007


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010257988.10PREDICTED: cleavage stimulation factor subunit 1 isoform X1 [Nelumbo nucifera]
Swissprottr|Q8L4J2|CTF50_ARATH0Cleavage stimulation factor subunit 50 {ECO:0000303|PubMed:12379796}
trEMBLtr|B9RLL1|B9RLL1_RICCO0Cleavage stimulation factor 50 kDa subunit, putative {ECO:0000313|EMBL:EEF47736.1}
TAIR10AT5G60940.14E-169Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1348510013489259-
GWHAAZE00000005mRNA1348510013489259-
GWHAAZE00000005exon1348510013485255-
GWHAAZE00000005exon1348533813485394-
GWHAAZE00000005exon1348550713485615-
GWHAAZE00000005exon1348590313486057-
GWHAAZE00000005exon1348614913486249-
GWHAAZE00000005exon1348637613486433-
GWHAAZE00000005exon1348655013486601-
GWHAAZE00000005exon1348677913486849-
GWHAAZE00000005exon1348694913487035-
GWHAAZE00000005exon1348711513487198-
GWHAAZE00000005exon1348804913488165-
GWHAAZE00000005exon1348826313488346-
GWHAAZE00000005exon1348915813489259-
GWHAAZE00000005CDS1348915813489259-
GWHAAZE00000005CDS1348826313488346-
GWHAAZE00000005CDS1348804913488165-
GWHAAZE00000005CDS1348711513487198-
GWHAAZE00000005CDS1348694913487035-
GWHAAZE00000005CDS1348677913486849-
GWHAAZE00000005CDS1348655013486601-
GWHAAZE00000005CDS1348637613486433-
GWHAAZE00000005CDS1348614913486249-
GWHAAZE00000005CDS1348590313486057-
GWHAAZE00000005CDS1348550713485615-
GWHAAZE00000005CDS1348533813485394-
GWHAAZE00000005CDS1348510013485255-
Transcript Sequence

Network for GWHGAAZE018007

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD401031280.0027
PF00400.33WD401501855.50E-06
PF00400.33WD402012220.025
PF00400.33WD402502750.17
PF00400.33WD402973180.053
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K14406CSTF1 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.831
SRR3591706second leaf11.190
SRR3591707mature leaf10.286
SRR3591708Shoot apex22.121
SRR3591709Stem16.216
SRR3591710White floral bud11.689
SRR3591711White flower16.451
SRR3591712Green floral bud10.258
SRR3591713Yellow flower13.840
SRP173429 SRR8316895Juvenile bud stage 9.363
SRR8316896Juvenile bud stage 10.177
SRR8316897Juvenile bud stage 6.165
SRR8316894Third green stage 5.964
SRR8316900Third green stage 12.219
SRR8316901Third green stage 12.141
SRR8316898Complete white stage 4.415
SRR8316899Complete white stage 18.310
SRR8316903Complete white stage 5.852
SRR8316902Silver flowering stage6.479
SRR8316904Silver flowering stage8.263
SRR8316905Silver flowering stage2.351
SRR8316906Gold flowering stage 8.924
SRR8316907Gold flowering stage 10.251
SRR8316908Gold flowering stage 9.601
SRP132670SRR6706286Control12.311
SRR6706287Light intensity 50%13.215
SRR6706288Light intensity 20%13.666
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.650
CNS0095593Slightly white alabastrum(diploid) 211.625
CNS0095594Slightly white alabastrum(diploid) 310.597
CNS0095595Whole white alabastrum(diploid) 210.637
CNS0095596Whole white alabastrum(diploid) 36.696
CNS0095597Whole white alabastrum(diploid) 47.744
CNS0095598Silvery flower (diploied) 113.004
CNS0095599Silvery flower (diploied) 210.026
CNS0095600Silvery flower (diploied) 310.186
CNS0095601Golden flower (diploid) 19.818
CNS0095602Golden flower (diploid) 29.405
CNS0095603Golden flower (diploid) 37.798
CNS0095604Slightly white alabastrum(tetraploid) 112.613
CNS0095605Slightly white alabastrum(tetraploid) 210.792
CNS0095606Slightly white alabastrum(tetraploid) 316.800
CNS0095607Whole white alabastrum(tetraploid) 110.487
CNS0095608Whole white alabastrum(tetraploid) 26.614
CNS0095609Whole white alabastrum(tetraploid) 311.685
CNS0095610Silvery flower (tetraploid) 112.666
CNS0095611Silvery flower (tetraploid) 212.398
CNS0095612Silvery flower (tetraploid) 39.412
CNS0095613Golden flower (tetraploid) 16.490
CNS0095614Golden flower (tetraploid) 211.034
CNS0095615Golden flower (tetraploid) 34.811
CRA001975CRR073297Stem 110.999
CRR073298Stem 210.374
CRR073299Stem 311.208
CRR073300Leaf 112.773
CRR073301Leaf 212.604
CRR073302Leaf 37.551
CRR073303Juvenile bud 15.786
CRR073304Juvenile bud 24.315
CRR073305Juvenile bud 310.881
CRR073306Third green 11.052
CRR073307Third green 21.326
CRR073308Third green 31.651
CRR073309Second white 13.007
CRR073310Second white 21.726
CRR073311Second white 32.373
CRR073312Silver flowering 11.487
CRR073313Silver flowering 20.771
CRR073314Silver flowering 31.372
CRR073315Gold flowering 15.081
CRR073316Gold flowering 26.012
CRR073317Gold flowering 33.227
CRR073318Tawny withering 112.946
CRR073319Tawny withering 215.921
CRR073320Tawny withering 310.913