Gene detail

Detail information of GWHGAAZE017951

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010102507.1	3.26644E-79	hypothetical protein L484_014563 [Morus notabilis]
Swissprot	tr\|Q8VWN6\|RFS_PEA	2E-77	Galactinol--sucrose galactosyltransferase
trEMBL	tr\|W9RRG8\|W9RRG8_9ROSA	1E-79	Uncharacterized protein {ECO:0000313\|EMBL:EXB93571.1}
TAIR10	AT5G40390.1	5E-58	Raffinose synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12822222	12823250	+
GWHAAZE00000005	mRNA	12822222	12823250	+
GWHAAZE00000005	exon	12822222	12822586	+
GWHAAZE00000005	exon	12822688	12822826	+
GWHAAZE00000005	exon	12822933	12823250	+
GWHAAZE00000005	CDS	12822222	12822586	+
GWHAAZE00000005	CDS	12822688	12822826	+
GWHAAZE00000005	CDS	12822933	12823250	+

Transcript Sequence
>GWHTAAZE017973 ATGACTTTTGGTGCAATGATCCAGCTGGGGATCCAAATGGGGCATTCTGGCTCCAAGGGTGCCATATGGTGCATTGTGCTTATAACAGTATGTGTATGGGTAAATTTCATTCACCCAAATTGGGACATGTTCCAATCCACTCACCCTTGTGCTGGATTCCACGCCGCCTCTAGGGCTATTTCTGGTGGACCGATTTATATAAGCGACTTGGTTGGGAAACACAACTTCCATTTGCTTAAGAGTCTAGAGCTGCCCGATGGTTCAAACTTAAGGTGCCAACATTATGTGCTCCCAACTAGAGATTGCCTATTTGAAGACCCTTTACATGACAGAAAACTATGCTCAAGATTTGGAACGGCAATAGACATACCAGAGTTCTTGGAGCATTTAACTGTCAAGGAGGGGGATGGTGCCCAGACTCCAGACGAAACAAAAGCACTCCTAAATTTTGCGCGCTGTGACCTGTTTGGTGGGCCGGAAAGATGTCGAGTGGAGGAACAGAAGCCATCAGACTACGAAGTTATTTCAGTTACACCAGTGAAAGTTCTCCCTACAAAATTAGTTCAATATGCTCCTATTGGATTGGTGAACATGCTAAACTCCGGTGGAGCAATCCAGTCACTAGACTATAACAATGATGACAGCTCGATAAGAGTTGGAGTGAGAGGAAGTGGAGAAATGAGAGCTTTTGCAATGGAAAAAACAGTATCTTGTGTGATCAATAGAGTGAGCATAAAATTCAGTTATGAGGATCATATGGTAATGGTCCATGTTCCGTGGCCCAATTCGTCCAAATCATCGGTAATTGAGTTCTTGTTTTGA

Network for GWHGAAZE017951

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05691.13	Raffinose_syn	32	112	1.40E-39
PF05691.13	Raffinose_syn	168	257	1.60E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06617	E2.4.1.82	Metabolic pathways	map01100
K06617	E2.4.1.82	Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.297
	SRR3591706	second leaf	0.950
	SRR3591707	mature leaf	0.078
	SRR3591708	Shoot apex	0.510
	SRR3591709	Stem	3.985
	SRR3591710	White floral bud	0.939
	SRR3591711	White flower	1.484
	SRR3591712	Green floral bud	0.786
	SRR3591713	Yellow flower	1.480
SRP173429	SRR8316895	Juvenile bud stage	0.793
	SRR8316896	Juvenile bud stage	0.547
	SRR8316897	Juvenile bud stage	0.428
	SRR8316894	Third green stage	0.085
	SRR8316900	Third green stage	0.632
	SRR8316901	Third green stage	0.796
	SRR8316898	Complete white stage	0.565
	SRR8316899	Complete white stage	1.595
	SRR8316903	Complete white stage	0.444
	SRR8316902	Silver flowering stage	0.247
	SRR8316904	Silver flowering stage	0.167
	SRR8316905	Silver flowering stage	0.042
	SRR8316906	Gold flowering stage	0.101
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.296
SRP132670	SRR6706286	Control	0.720
	SRR6706287	Light intensity 50%	0.652
	SRR6706288	Light intensity 20%	0.651
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.464
	CNS0095593	Slightly white alabastrum(diploid) 2	0.403
	CNS0095594	Slightly white alabastrum(diploid) 3	0.899
	CNS0095595	Whole white alabastrum(diploid) 2	0.621
	CNS0095596	Whole white alabastrum(diploid) 3	0.563
	CNS0095597	Whole white alabastrum(diploid) 4	0.383
	CNS0095598	Silvery flower (diploied) 1	0.095
	CNS0095599	Silvery flower (diploied) 2	0.085
	CNS0095600	Silvery flower (diploied) 3	0.155
	CNS0095601	Golden flower (diploid) 1	0.276
	CNS0095602	Golden flower (diploid) 2	0.483
	CNS0095603	Golden flower (diploid) 3	0.158
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.832
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.108
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.069
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.641
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.672
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.391
	CNS0095610	Silvery flower (tetraploid) 1	0.207
	CNS0095611	Silvery flower (tetraploid) 2	0.361
	CNS0095612	Silvery flower (tetraploid) 3	0.115
	CNS0095613	Golden flower (tetraploid) 1	0.429
	CNS0095614	Golden flower (tetraploid) 2	0.334
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.157
	CRR073298	Stem 2	0.813
	CRR073299	Stem 3	0.243
	CRR073300	Leaf 1	0.532
	CRR073301	Leaf 2	0.990
	CRR073302	Leaf 3	0.305
	CRR073303	Juvenile bud 1	0.101
	CRR073304	Juvenile bud 2	0.083
	CRR073305	Juvenile bud 3	0.168
	CRR073306	Third green 1	0.109
	CRR073307	Third green 2	0.077
	CRR073308	Third green 3	0.148
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.074
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.640
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.038
	CRR073319	Tawny withering 2	0.312
	CRR073320	Tawny withering 3	0.262