Gene detail

Detail information of GWHGAAZE017945

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009587832.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540 [Nicotiana tomentosiformis]
Swissprot	tr\|C0LGR3\|Y4265_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (Precursor)
trEMBL	tr\|K4BKB1\|K4BKB1_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g112580.2.1}
TAIR10	AT5G56040.2	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12725488	12729196	-
GWHAAZE00000005	mRNA	12725488	12729196	-
GWHAAZE00000005	exon	12726376	12729196	-
GWHAAZE00000005	exon	12725488	12726146	-
GWHAAZE00000005	CDS	12726376	12729196	-
GWHAAZE00000005	CDS	12725653	12726146	-
GWHAAZE00000005	three_prime_UTR	12725488	12725652	-

Transcript Sequence
>GWHTAAZE017967 ATGCCTGTTAATCCATGGACTACCATCTTCTTCTTCTCCCTTTCCCTTTTAACATGCGCTTGCGCCATAAACACACAAGGCGAATTGCTTCTTTCATGGAAGAAAAGCTTAAATGGATCCCTGGAGTCCTTAAGCAATTGGGATCCCACCGATGAAACTCCTTGCTTGTGGTTTGGCATCTCTTGTAACTTCAACAATGAAGTTGTGGAGGTTAATTTGAGGTACATAGATTTGTATGGCAATGTTCCCTCTAATTTTAGCTCGTTCCTGAAGCTAAACAAGCTCATTCTTTCGGGAACGAACTTGACTGGTTCCATCCCGAAAGAGATTGGTGATCTTCAAGAATTGCACTCACTGGACTTGAGTGACAACACATTGAGTGGCGAAATCCCAAGCGAGATTTGTCACTTGCCGAAGCTCGAAGAACTCTACCTCAATTCAAACAGGCTTGAAGGATCAATACCCATTGATATTGGGAATCTCACAAGCTTAGTATCGCTTTTTCTCTATGATAATCAGCTAAGTGGTGAAGTTCCAAGCACCATTGGCAAGTTAAAAAATCTTGAAGTGATAAGAGCTGGTGGAAACAAGAACCTACAAGGCCAACTGCCCCAAGAAATTGGGAATTGTACAAATTTGGTCTTGTTAGGCTTAGCTGAAACAAGTATCTCTGGGTTCCTCCCTTCAACACTAGGCCTATTGAAGAAGCTGGAGACTTTGGCGATCTACACTGCCCTAGTCTCTGGCCAAATCCCACCAGAGCTGGGTGACTGCACCGAGCTCCGGAGCATTTTTTTGTACGAAAACTCGCTTGCTGGTTCAATTCCAAGCCAATTAGGGAATCTCAAAAACCTCAAAAATCTCTTGCTATGGCAGAACAATTTAGTTGGCATTATTCCACCAGAGCTTGGAGATTGCAAGCAATTACTCGTCATTGATATATCAATGAATTCATTAACTGGAAGCATACCGGTGACGTTTGGTAATTTGACTTCCTTACAAGAGCTACAGCTAAGTGTCAATCAACTCTCCGGTCAAATCCCTAGCCAGATTGGGAACTGTCTAAGCATGACTCACATCGAGCTCGATAACAATCAAATCAGTGGTACTATACCTTCAGAATTAGGGAACCTTGTGAACCTCGCACTATTATTCCTGTGGCAAAATCGCCTCGAAGGGGACATACCTGTTTCATTATCCTCGTGCCGCAATCTTGAAGCAATTGATCTGTCTCAAAATGCGTTGACGGGGCCAATTCCGAGAGGTATTTTCAATTTGCTGATGCTGAACAAGTTGTTGGTGATGTCAAACAATTTGTCCGGTTCGATACCGCCGGAGATCGGGAATTGCTCTTCCCTGATCAGGTTCAGAGCCAACAATAACAAGCTCACCGGATCCATTCCCCCGCAGATTCGCAATTTGAAGAATTTAAACTTCCTAGATCTCGGATCGAACCGGCTAAAAGGAGTTCTACCATTGGAGATCTCCGGTTGCCGGAATCTCTCGTTTCTGGACTTACATTCGAATTCCATTGCCGGAAACTTGCCGGCAAATTTAAATCAGCTCGTTTCGCTTCAGTTCGTTGACGTCTCCGAGAACCTGATTGAAGGTACATTGAGTCCGAATCTCGGATCGCTCAGTTTGCTCACCAAACTTGTTCTAAGCAATAACCGATTCTCTGGTTCGATTCCATCTAAAATCAGTTCTTGTTCAAAACTTCAGTTACTTGACCTCAGCCGTAACGAGCTCTCAGGTAAGATTCCGGCGAGTATTGGAAAGATTCCGGCACTGGAGATCGCCCTAAATCTAAGCTGGAACAAACTTTTCGGCGAGATACCTGCAGAATTCGCGGCGATGGATAAGCTAGGAGTTTTAGATCTATCTCATAATCAACTCTCCGGTGACCTTCAGTACCTTGCGGATCTCCAAAATCTCGTGGTCCTCAATATCTCGCACAACAACTTCTCCGGTCACGTGCCGGACACATCGTTCTTCGCAAAGCTACCCGTCAGCGTCCTCGCCGGAAACGAAGCATTGTGCTTTTCCGGCAACAGGTGTGCCTCTGACAGAGGCGGCATATCTAAACACGGCAGGGCCGCAGCGTGGGTGGCAATGGTGGTGTTACTGTGCGCCGCGTGTGCCCTGCTAATGGCGGCACTCTACATCATACTCGGAGGTAAGATGAGGAACCGTGGGGCAGGTGAGTGCCACGCGGATGGGAGCGATGACGTGGAACTGGGCCCCCCTTGGGAGGTCACGCTGTACCAAAAGCTCGACTTGTCAATTGCTGACGTGGCAAAGTCCTTGACAACTGCCAACGTTATCGGACGAGGCCGGTCTGGAATAGTATACCGGGCGAATGCCTCCACCGGGTTAGCGGTTGCAGTCAAGAGATTCCGATCATCAGAAAAGTACTCAGCGTCGGCCTTCTCGTCGGAGATTGCCACACTGGCACGTATACGACACCGGAATATTATTAAACTGTTGGGTTGCGCAGCAAATGGGAAAACAAAATTGTTATTGTATGATTATTTGTCAAATGGTTCGCTTGGTGCATTGTTACATGAAGAATGCGGAGGATTAATAGAGTGGGAGACTCGGTTCAAGATAGCATTGGGTGTTGCTGAAGGCTTGGCGTATTTGCACCACGACTGCGTGCCAGCTATCTTGCATAGGGATGTGAAGGCGCACAACATACTATTAGGGGATTGTTACGAGCCATGTTTGGCAGATTTTGGACTTGCCAGATTGGTTGAGGACGGAAATGATTCGTTTTCAGTGAATCCTCAATTTGCTGGCTCTTACGGCTACATTGCTCCAGAATATGCTTGCATGCTAAAAATCACTGAGAAGAGCGATGTTTACAGTTACGGTGTAGTTCTGTTAGAAATCATAACAAGAAAAATGCCAGTGGATCCTTCCTTCCCCGACGGCCAACATGTTATTCAGTGGGTTCGGGATCACTTAAAGAACAAACAAGACCCAATTAGAATTGTTGATGTGAAACTCCAAGGCAATCCTGAATCACAAATTCAAGAAATGCTCCAGGCCCTTGGAATCGCACTCCTTTGCACTAGCAATAGAGTTGAAGATCGTCCAACAATGAAAGATGTCGTCGCATTACTACGAGAAATTAGACAAGAGGTTCCAGCAGGAGGTGAGGCACACAAGACAACTAAATCTTTAAAAGATCCTAATGTGTCATACTCATCTTCGTCTGTGACCCCGGCTCAGTTGTTGCTCCTTCAAGGATCATCTAATTGCTCAATTGCGTATTTGTCTTCCTCAAGTTCTTATCCGTCTAGGTATCAATAAGGATAATGGATACGGCATTTCCTTTTTTGTCTTGTAAAGATTAGGAGATTAGGGGGAGTATTTTGTTGAACTGATAAAGTGGACAAAATTGTGCATAGCAACCTAACATTATTAATTCACTAGGTTTGAGAGCATCATTAACTTATTTTTTCGTTTCAATTTAAG

Network for GWHGAAZE017945

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	24	63	7.20E-08
PF13855.7	LRR_8	91	150	2.10E-08
PF13855.7	LRR_8	284	343	1.30E-08
PF13855.7	LRR_8	549	608	9.30E-08
PF00069.26	Pkinase	772	1039	7.10E-42

Protein Sequence

>GWHPAAZE017956
MPVNPWTTIFFFSLSLLTCACAINTQGELLLSWKKSLNGSLESLSNWDPTDETPCLWFGISCNFNNEVVEVNLRYIDLYGNVPSNFSSFLKLNKLILSGTNLTGSIPKEIGDLQELHSLDLSDNTLSGEIPSEICHLPKLEELYLNSNRLEGSIPIDIGNLTSLVSLFLYDNQLSGEVPSTIGKLKNLEVIRAGGNKNLQGQLPQEIGNCTNLVLLGLAETSISGFLPSTLGLLKKLETLAIYTALVSGQIPPELGDCTELRSIFLYENSLAGSIPSQLGNLKNLKNLLLWQNNLVGIIPPELGDCKQLLVIDISMNSLTGSIPVTFGNLTSLQELQLSVNQLSGQIPSQIGNCLSMTHIELDNNQISGTIPSELGNLVNLALLFLWQNRLEGDIPVSLSSCRNLEAIDLSQNALTGPIPRGIFNLLMLNKLLVMSNNLSGSIPPEIGNCSSLIRFRANNNKLTGSIPPQIRNLKNLNFLDLGSNRLKGVLPLEISGCRNLSFLDLHSNSIAGNLPANLNQLVSLQFVDVSENLIEGTLSPNLGSLSLLTKLVLSNNRFSGSIPSKISSCSKLQLLDLSRNELSGKIPASIGKIPALEIALNLSWNKLFGEIPAEFAAMDKLGVLDLSHNQLSGDLQYLADLQNLVVLNISHNNFSGHVPDTSFFAKLPVSVLAGNEALCFSGNRCASDRGGISKHGRAAAWVAMVVLLCAACALLMAALYIILGGKMRNRGAGECHADGSDDVELGPPWEVTLYQKLDLSIADVAKSLTTANVIGRGRSGIVYRANASTGLAVAVKRFRSSEKYSASAFSSEIATLARIRHRNIIKLLGCAANGKTKLLLYDYLSNGSLGALLHEECGGLIEWETRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDCYEPCLADFGLARLVEDGNDSFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSYGVVLLEIITRKMPVDPSFPDGQHVIQWVRDHLKNKQDPIRIVDVKLQGNPESQIQEMLQALGIALLCTSNRVEDRPTMKDVVALLREIRQEVPAGGEAHKTTKSLKDPNVSYSSSSVTPAQLLLLQGSSNCSIAYLSSSSSYPSRYQ

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.966
	SRR3591706	second leaf	5.180
	SRR3591707	mature leaf	5.556
	SRR3591708	Shoot apex	5.959
	SRR3591709	Stem	4.639
	SRR3591710	White floral bud	0.656
	SRR3591711	White flower	0.832
	SRR3591712	Green floral bud	1.475
	SRR3591713	Yellow flower	0.775
SRP173429	SRR8316895	Juvenile bud stage	1.376
	SRR8316896	Juvenile bud stage	1.509
	SRR8316897	Juvenile bud stage	0.978
	SRR8316894	Third green stage	0.551
	SRR8316900	Third green stage	1.458
	SRR8316901	Third green stage	1.249
	SRR8316898	Complete white stage	0.346
	SRR8316899	Complete white stage	1.802
	SRR8316903	Complete white stage	0.426
	SRR8316902	Silver flowering stage	0.132
	SRR8316904	Silver flowering stage	0.373
	SRR8316905	Silver flowering stage	0.078
	SRR8316906	Gold flowering stage	0.352
	SRR8316907	Gold flowering stage	0.248
	SRR8316908	Gold flowering stage	0.220
SRP132670	SRR6706286	Control	1.273
	SRR6706287	Light intensity 50%	1.363
	SRR6706288	Light intensity 20%	1.613
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.583
	CNS0095593	Slightly white alabastrum(diploid) 2	1.237
	CNS0095594	Slightly white alabastrum(diploid) 3	0.733
	CNS0095595	Whole white alabastrum(diploid) 2	1.076
	CNS0095596	Whole white alabastrum(diploid) 3	0.388
	CNS0095597	Whole white alabastrum(diploid) 4	0.767
	CNS0095598	Silvery flower (diploied) 1	0.634
	CNS0095599	Silvery flower (diploied) 2	1.039
	CNS0095600	Silvery flower (diploied) 3	1.612
	CNS0095601	Golden flower (diploid) 1	0.991
	CNS0095602	Golden flower (diploid) 2	1.674
	CNS0095603	Golden flower (diploid) 3	1.548
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.721
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.369
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.729
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.292
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.824
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.362
	CNS0095610	Silvery flower (tetraploid) 1	1.150
	CNS0095611	Silvery flower (tetraploid) 2	1.975
	CNS0095612	Silvery flower (tetraploid) 3	0.509
	CNS0095613	Golden flower (tetraploid) 1	0.715
	CNS0095614	Golden flower (tetraploid) 2	0.954
	CNS0095615	Golden flower (tetraploid) 3	0.569
CRA001975	CRR073297	Stem 1	2.473
	CRR073298	Stem 2	2.595
	CRR073299	Stem 3	2.741
	CRR073300	Leaf 1	2.508
	CRR073301	Leaf 2	2.427
	CRR073302	Leaf 3	1.845
	CRR073303	Juvenile bud 1	2.122
	CRR073304	Juvenile bud 2	0.707
	CRR073305	Juvenile bud 3	3.143
	CRR073306	Third green 1	0.891
	CRR073307	Third green 2	0.964
	CRR073308	Third green 3	1.089
	CRR073309	Second white 1	0.022
	CRR073310	Second white 2	0.141
	CRR073311	Second white 3	0.060
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.019
	CRR073314	Silver flowering 3	0.164
	CRR073315	Gold flowering 1	2.139
	CRR073316	Gold flowering 2	3.321
	CRR073317	Gold flowering 3	2.430
	CRR073318	Tawny withering 1	1.699
	CRR073319	Tawny withering 2	0.772
	CRR073320	Tawny withering 3	1.639