Detail information of GWHGAAZE017890


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006439752.16.4455E-112hypothetical protein CICLE_v10022413mg [Citrus clementina]
Swissprottr|Q94JX5|WLIM1_ARATH2E-91LIM domain-containing protein WLIM1 {ECO:0000305}
trEMBLtr|A0A067G249|A0A067G249_CITSI2E-112Uncharacterized protein {ECO:0000313|EMBL:KDO69762.1}
TAIR10AT1G10200.12E-72GATA type zinc finger transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1216639012168481+
GWHAAZE00000005mRNA1216639012168481+
GWHAAZE00000005exon1216639012166626+
GWHAAZE00000005exon1216734512167441+
GWHAAZE00000005exon1216752712167567+
GWHAAZE00000005exon1216770012167786+
GWHAAZE00000005exon1216825412168481+
GWHAAZE00000005five_prime_UTR1216639012166485+
GWHAAZE00000005CDS1216648612166626+
GWHAAZE00000005CDS1216734512167441+
GWHAAZE00000005CDS1216752712167567+
GWHAAZE00000005CDS1216770012167786+
GWHAAZE00000005CDS1216825412168481+
Transcript Sequence

Network for GWHGAAZE017890

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00412.23LIM12661.20E-10
PF00412.23LIM1101652.10E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLIM

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf68.383
SRR3591706second leaf13.862
SRR3591707mature leaf22.092
SRR3591708Shoot apex24.560
SRR3591709Stem79.184
SRR3591710White floral bud31.680
SRR3591711White flower24.045
SRR3591712Green floral bud18.639
SRR3591713Yellow flower13.325
SRP173429 SRR8316895Juvenile bud stage 4.926
SRR8316896Juvenile bud stage 5.242
SRR8316897Juvenile bud stage 3.716
SRR8316894Third green stage 4.424
SRR8316900Third green stage 12.855
SRR8316901Third green stage 12.258
SRR8316898Complete white stage 11.623
SRR8316899Complete white stage 25.921
SRR8316903Complete white stage 16.506
SRR8316902Silver flowering stage12.363
SRR8316904Silver flowering stage10.026
SRR8316905Silver flowering stage4.546
SRR8316906Gold flowering stage 9.369
SRR8316907Gold flowering stage 7.152
SRR8316908Gold flowering stage 23.720
SRP132670SRR6706286Control15.225
SRR6706287Light intensity 50%21.824
SRR6706288Light intensity 20%22.445
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.914
CNS0095593Slightly white alabastrum(diploid) 230.581
CNS0095594Slightly white alabastrum(diploid) 314.838
CNS0095595Whole white alabastrum(diploid) 213.951
CNS0095596Whole white alabastrum(diploid) 39.568
CNS0095597Whole white alabastrum(diploid) 410.133
CNS0095598Silvery flower (diploied) 116.210
CNS0095599Silvery flower (diploied) 210.089
CNS0095600Silvery flower (diploied) 313.210
CNS0095601Golden flower (diploid) 116.523
CNS0095602Golden flower (diploid) 215.101
CNS0095603Golden flower (diploid) 315.899
CNS0095604Slightly white alabastrum(tetraploid) 113.747
CNS0095605Slightly white alabastrum(tetraploid) 213.948
CNS0095606Slightly white alabastrum(tetraploid) 327.623
CNS0095607Whole white alabastrum(tetraploid) 111.455
CNS0095608Whole white alabastrum(tetraploid) 213.307
CNS0095609Whole white alabastrum(tetraploid) 38.882
CNS0095610Silvery flower (tetraploid) 130.383
CNS0095611Silvery flower (tetraploid) 221.202
CNS0095612Silvery flower (tetraploid) 321.785
CNS0095613Golden flower (tetraploid) 118.849
CNS0095614Golden flower (tetraploid) 217.187
CNS0095615Golden flower (tetraploid) 316.409
CRA001975CRR073297Stem 19.943
CRR073298Stem 28.915
CRR073299Stem 39.122
CRR073300Leaf 119.148
CRR073301Leaf 217.477
CRR073302Leaf 325.651
CRR073303Juvenile bud 127.979
CRR073304Juvenile bud 226.967
CRR073305Juvenile bud 334.625
CRR073306Third green 128.352
CRR073307Third green 238.182
CRR073308Third green 330.372
CRR073309Second white 15.723
CRR073310Second white 23.869
CRR073311Second white 32.697
CRR073312Silver flowering 11.225
CRR073313Silver flowering 22.004
CRR073314Silver flowering 30.964
CRR073315Gold flowering 162.464
CRR073316Gold flowering 271.053
CRR073317Gold flowering 331.078
CRR073318Tawny withering 1111.730
CRR073319Tawny withering 2121.997
CRR073320Tawny withering 3162.445