Detail information of GWHGAAZE017842


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14850.10unnamed protein product [Coffea canephora]
Swissprottr|Q9M9S2|PLY3_ARATH0Probable pectate lyase 3 (Precursor)
trEMBLtr|A0A068V234|A0A068V234_COFCA0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT1G14420.16E-143Pectate lyase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1153152511534255-
GWHAAZE00000005mRNA1153152511534255-
GWHAAZE00000005exon1153152511531743-
GWHAAZE00000005exon1153186511532107-
GWHAAZE00000005exon1153225411532905-
GWHAAZE00000005exon1153412511534255-
GWHAAZE00000005CDS1153412511534255-
GWHAAZE00000005CDS1153225411532905-
GWHAAZE00000005CDS1153186511532107-
GWHAAZE00000005CDS1153152511531743-
Transcript Sequence

Network for GWHGAAZE017842

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04431.14Pec_lyase_N7564.70E-16
PF00544.20Pectate_lyase_41533325.70E-21
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName
GO:0030570molecular_functionpectate lyase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.826
SRR3591706second leaf0.000
SRR3591707mature leaf0.294
SRR3591708Shoot apex0.623
SRR3591709Stem6.520
SRR3591710White floral bud694.460
SRR3591711White flower35.284
SRR3591712Green floral bud676.103
SRR3591713Yellow flower21.007
SRP173429 SRR8316895Juvenile bud stage 25.875
SRR8316896Juvenile bud stage 145.222
SRR8316897Juvenile bud stage 68.070
SRR8316894Third green stage 72.130
SRR8316900Third green stage 363.036
SRR8316901Third green stage 377.785
SRR8316898Complete white stage 0.217
SRR8316899Complete white stage 3.708
SRR8316903Complete white stage 0.647
SRR8316902Silver flowering stage7.170
SRR8316904Silver flowering stage12.621
SRR8316905Silver flowering stage4.053
SRR8316906Gold flowering stage 2.708
SRR8316907Gold flowering stage 0.963
SRR8316908Gold flowering stage 0.719
SRP132670SRR6706286Control278.274
SRR6706287Light intensity 50%277.551
SRR6706288Light intensity 20%237.175
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1483.947
CNS0095593Slightly white alabastrum(diploid) 2411.954
CNS0095594Slightly white alabastrum(diploid) 3600.150
CNS0095595Whole white alabastrum(diploid) 21046.266
CNS0095596Whole white alabastrum(diploid) 31219.928
CNS0095597Whole white alabastrum(diploid) 41389.314
CNS0095598Silvery flower (diploied) 135.874
CNS0095599Silvery flower (diploied) 2126.435
CNS0095600Silvery flower (diploied) 330.144
CNS0095601Golden flower (diploid) 138.447
CNS0095602Golden flower (diploid) 224.585
CNS0095603Golden flower (diploid) 324.216
CNS0095604Slightly white alabastrum(tetraploid) 1891.199
CNS0095605Slightly white alabastrum(tetraploid) 21094.504
CNS0095606Slightly white alabastrum(tetraploid) 30.714
CNS0095607Whole white alabastrum(tetraploid) 11770.177
CNS0095608Whole white alabastrum(tetraploid) 21970.163
CNS0095609Whole white alabastrum(tetraploid) 3847.292
CNS0095610Silvery flower (tetraploid) 119.468
CNS0095611Silvery flower (tetraploid) 284.905
CNS0095612Silvery flower (tetraploid) 3195.860
CNS0095613Golden flower (tetraploid) 138.010
CNS0095614Golden flower (tetraploid) 27.059
CNS0095615Golden flower (tetraploid) 3117.729
CRA001975CRR073297Stem 160.153
CRR073298Stem 284.422
CRR073299Stem 337.016
CRR073300Leaf 1368.380
CRR073301Leaf 2238.460
CRR073302Leaf 3120.007
CRR073303Juvenile bud 1267.807
CRR073304Juvenile bud 2224.502
CRR073305Juvenile bud 327.601
CRR073306Third green 1156.056
CRR073307Third green 2205.606
CRR073308Third green 3177.517
CRR073309Second white 18.678
CRR073310Second white 228.231
CRR073311Second white 326.002
CRR073312Silver flowering 1124.052
CRR073313Silver flowering 2113.699
CRR073314Silver flowering 376.827
CRR073315Gold flowering 1151.033
CRR073316Gold flowering 234.502
CRR073317Gold flowering 359.053
CRR073318Tawny withering 1143.431
CRR073319Tawny withering 2119.252
CRR073320Tawny withering 3138.780