Detail information of GWHGAAZE017836


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001275156.15.95792E-94ubiquitin carrier-like protein [Solanum tuberosum]
Swissprottr|P35130|UBC2_MEDSA3E-95Ubiquitin-conjugating enzyme E2 2
trEMBLtr|K4C8H1|K4C8H1_SOLLC2E-94Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g070980.2.1}
TAIR10AT2G02760.19E-75ubiquiting-conjugating enzyme 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1142923111433260-
GWHAAZE00000005mRNA1142923111433260-
GWHAAZE00000005exon1143313611433260-
GWHAAZE00000005exon1143297911433004-
GWHAAZE00000005exon1143063411430723-
GWHAAZE00000005exon1143045911430547-
GWHAAZE00000005exon1142923111429323-
GWHAAZE00000005CDS1143313611433260-
GWHAAZE00000005CDS1143297911433004-
GWHAAZE00000005CDS1143063411430723-
GWHAAZE00000005CDS1143045911430547-
GWHAAZE00000005CDS1142923111429323-
Transcript Sequence

Network for GWHGAAZE017836

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con81343.80E-49
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10573UBE2A, UBC2, RAD6A Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf254.106
SRR3591706second leaf190.425
SRR3591707mature leaf240.925
SRR3591708Shoot apex283.409
SRR3591709Stem285.181
SRR3591710White floral bud231.767
SRR3591711White flower195.632
SRR3591712Green floral bud228.306
SRR3591713Yellow flower193.089
SRP173429 SRR8316895Juvenile bud stage 143.751
SRR8316896Juvenile bud stage 221.538
SRR8316897Juvenile bud stage 91.373
SRR8316894Third green stage 85.563
SRR8316900Third green stage 282.836
SRR8316901Third green stage 284.959
SRR8316898Complete white stage 140.934
SRR8316899Complete white stage 422.426
SRR8316903Complete white stage 201.974
SRR8316902Silver flowering stage127.428
SRR8316904Silver flowering stage155.620
SRR8316905Silver flowering stage77.318
SRR8316906Gold flowering stage 271.585
SRR8316907Gold flowering stage 248.705
SRR8316908Gold flowering stage 264.940
SRP132670SRR6706286Control339.238
SRR6706287Light intensity 50%346.296
SRR6706288Light intensity 20%373.910
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1176.515
CNS0095593Slightly white alabastrum(diploid) 2201.618
CNS0095594Slightly white alabastrum(diploid) 3167.471
CNS0095595Whole white alabastrum(diploid) 2172.508
CNS0095596Whole white alabastrum(diploid) 3161.547
CNS0095597Whole white alabastrum(diploid) 4166.618
CNS0095598Silvery flower (diploied) 1208.720
CNS0095599Silvery flower (diploied) 2193.884
CNS0095600Silvery flower (diploied) 3246.070
CNS0095601Golden flower (diploid) 1223.497
CNS0095602Golden flower (diploid) 2237.924
CNS0095603Golden flower (diploid) 3236.898
CNS0095604Slightly white alabastrum(tetraploid) 1202.069
CNS0095605Slightly white alabastrum(tetraploid) 2169.911
CNS0095606Slightly white alabastrum(tetraploid) 3302.026
CNS0095607Whole white alabastrum(tetraploid) 1142.554
CNS0095608Whole white alabastrum(tetraploid) 2132.191
CNS0095609Whole white alabastrum(tetraploid) 3215.783
CNS0095610Silvery flower (tetraploid) 1228.328
CNS0095611Silvery flower (tetraploid) 2242.198
CNS0095612Silvery flower (tetraploid) 3220.405
CNS0095613Golden flower (tetraploid) 1197.047
CNS0095614Golden flower (tetraploid) 2205.935
CNS0095615Golden flower (tetraploid) 3300.204
CRA001975CRR073297Stem 1227.106
CRR073298Stem 2218.096
CRR073299Stem 3265.582
CRR073300Leaf 1268.666
CRR073301Leaf 2255.755
CRR073302Leaf 3320.771
CRR073303Juvenile bud 1315.593
CRR073304Juvenile bud 2241.169
CRR073305Juvenile bud 3316.694
CRR073306Third green 1224.774
CRR073307Third green 2233.684
CRR073308Third green 3227.710
CRR073309Second white 1266.309
CRR073310Second white 2209.132
CRR073311Second white 3172.579
CRR073312Silver flowering 1173.557
CRR073313Silver flowering 2251.036
CRR073314Silver flowering 3167.526
CRR073315Gold flowering 1327.059
CRR073316Gold flowering 2327.500
CRR073317Gold flowering 3378.057
CRR073318Tawny withering 1316.451
CRR073319Tawny withering 2294.631
CRR073320Tawny withering 3341.096