Gene detail

Detail information of GWHGAAZE017692

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002513467.1	1.24416E-77	ubiquitin-protein ligase, putative [Ricinus communis]
Swissprot	tr\|Q9FZ52\|FDL3_ARATH	1E-15	F-box/FBD/LRR-repeat protein At1g16930
trEMBL	tr\|B9RI98\|B9RI98_RICCO	5E-78	Ubiquitin-protein ligase, putative {ECO:0000313\|EMBL:EEF48870.1}
TAIR10	AT1G32375.1	1E-12	F-box/RNI-like/FBD-like domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	9699985	9702119	-
GWHAAZE00000005	mRNA	9699985	9702119	-
GWHAAZE00000005	exon	9699985	9700284	-
GWHAAZE00000005	exon	9700881	9701024	-
GWHAAZE00000005	exon	9701136	9702119	-
GWHAAZE00000005	CDS	9701136	9702119	-
GWHAAZE00000005	CDS	9700881	9701024	-
GWHAAZE00000005	CDS	9699985	9700284	-

Transcript Sequence
>GWHTAAZE017712 ATGACAAATTTCAGTTTCTTAATTATTATTTATTATGAGCCTAACAGCTTATTATTGTCTTTGAACTTAAATTTGTTTGTTTTCAATCGCCAGTGCAGCACAAGCAGAAATATTCTTTTGGCAGATCGTATTAGTGGGTTGCCAGATGACATTCTTATAGCTATTCTGTCGCACTTGACGATGAAAGAAGCAGCAAGTACCACCGTTCTCTCTCATAGATGGGACAATTTATGGATGCACACCACTGGTTGCTTGGACTTTGATGATTCAAGAACTTTAACTTTTTGGACTATTAAGCTTTATATAGAGAGTCGTTTTAGGAAACCGGATCCTGTAGAAGAGGGGCCCTTGGTTGAAGCAGATAGGGTCTTGTTTGTTGGATGGGTAAATCGTATTTTGAAGTTGCATAAGGGTGCCACAATCGACGGATTTAGAGTCCATTTTGATTTGGATTCAAGTTTTAGATCAGATATTGATAGCTGGATTAACTTTGCGTTGCAAAAGAGAGCAAGGAGACTTGAGCTGGACTTGGACCGATTGTTTAAACCTTGGGAGGGCATCTACCCTTTTCCAGAAAAATCTGTTATTGGCCATCCAACCATCAATTCCCTGACCCATCTCAAGTTGAACTATGTAAACGTGACTCGGGAACTACTTGAGTACATTTTATCCAACTGCCCCTTTCTTGAATTTTTATGCGTTAGATGCTCGCGTAGCCCGGTTGGTGCCAAAGTTGATGCCGCCTCTCCGAAGCTCCATTATTTGGAGATATCCTGCGTAAATGTGGAGTGTCTAGAGATTTCTTCTGCAATAAATCTTAGGACGTTGAAATTCTTTGGACCAGAAGCAAGCCTTTGTTTCAAGAATGCTCCAAATCTTATTGATGTATCATTTGGGGGATCCTACTGTAAAGACATTGCTCAGAAACTCCATGGGCATTCCTTCTCTCAGATAGAGAAACTTACGTTGAACATGAGTTGTTATATTTTCGAGACCTATGACAGATTCCCTATATTAAAAAATCTCAAGCAATTGGAATTGGTAGTGAAGGGATGGGATCCACACGGTGTCCTTCACTATGCAACACTCCTTGGGAAATGCCCAATGTTGTATAGACTTTGGGTGCAGTTCAATTGGTTGGAGGACCCGAAAGAAATAGAGATCCAGGAAAGGGAGTGTAGGCTCGAATGTCTCAAGTTTATTGAAATGTCTGCATTTCGTGGGAGTAGAACTGATCTGGAACTGGCTACGTTTCTGATTAAAAATTCTCCATGTCTCGAGAAGATTATTATTGATACTCGCGATCCTCCTAGTTACTCAGGAACCTTGTGGGAACCACTCCAGAAAGATAGCGTGGCCGCCCAGGAGTCCGCAACACAGCTGCTGTCAACTAAACTATCTCCGGGTGTTGAATACCTTATACTTTGA

Network for GWHGAAZE017692

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08387.11	FBD	392	431	1.70E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.356
	SRR3591706	second leaf	0.655
	SRR3591707	mature leaf	3.641
	SRR3591708	Shoot apex	1.789
	SRR3591709	Stem	0.200
	SRR3591710	White floral bud	21.991
	SRR3591711	White flower	22.882
	SRR3591712	Green floral bud	6.679
	SRR3591713	Yellow flower	26.868
SRP173429	SRR8316895	Juvenile bud stage	1.302
	SRR8316896	Juvenile bud stage	4.274
	SRR8316897	Juvenile bud stage	1.109
	SRR8316894	Third green stage	0.962
	SRR8316900	Third green stage	3.959
	SRR8316901	Third green stage	5.440
	SRR8316898	Complete white stage	7.598
	SRR8316899	Complete white stage	5.223
	SRR8316903	Complete white stage	9.496
	SRR8316902	Silver flowering stage	9.596
	SRR8316904	Silver flowering stage	12.023
	SRR8316905	Silver flowering stage	4.869
	SRR8316906	Gold flowering stage	20.701
	SRR8316907	Gold flowering stage	21.064
	SRR8316908	Gold flowering stage	30.602
SRP132670	SRR6706286	Control	2.040
	SRR6706287	Light intensity 50%	3.024
	SRR6706288	Light intensity 20%	2.627
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.012
	CNS0095593	Slightly white alabastrum(diploid) 2	1.886
	CNS0095594	Slightly white alabastrum(diploid) 3	2.909
	CNS0095595	Whole white alabastrum(diploid) 2	4.983
	CNS0095596	Whole white alabastrum(diploid) 3	6.017
	CNS0095597	Whole white alabastrum(diploid) 4	5.305
	CNS0095598	Silvery flower (diploied) 1	9.137
	CNS0095599	Silvery flower (diploied) 2	5.035
	CNS0095600	Silvery flower (diploied) 3	11.760
	CNS0095601	Golden flower (diploid) 1	6.123
	CNS0095602	Golden flower (diploid) 2	10.687
	CNS0095603	Golden flower (diploid) 3	9.487
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.548
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.950
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.871
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.714
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.046
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.485
	CNS0095610	Silvery flower (tetraploid) 1	15.851
	CNS0095611	Silvery flower (tetraploid) 2	12.321
	CNS0095612	Silvery flower (tetraploid) 3	36.908
	CNS0095613	Golden flower (tetraploid) 1	14.571
	CNS0095614	Golden flower (tetraploid) 2	14.694
	CNS0095615	Golden flower (tetraploid) 3	17.738
CRA001975	CRR073297	Stem 1	2.995
	CRR073298	Stem 2	3.294
	CRR073299	Stem 3	2.692
	CRR073300	Leaf 1	3.476
	CRR073301	Leaf 2	2.012
	CRR073302	Leaf 3	2.844
	CRR073303	Juvenile bud 1	2.595
	CRR073304	Juvenile bud 2	5.693
	CRR073305	Juvenile bud 3	3.791
	CRR073306	Third green 1	6.197
	CRR073307	Third green 2	6.212
	CRR073308	Third green 3	7.386
	CRR073309	Second white 1	11.450
	CRR073310	Second white 2	10.858
	CRR073311	Second white 3	11.863
	CRR073312	Silver flowering 1	11.910
	CRR073313	Silver flowering 2	12.826
	CRR073314	Silver flowering 3	11.311
	CRR073315	Gold flowering 1	1.505
	CRR073316	Gold flowering 2	1.045
	CRR073317	Gold flowering 3	3.561
	CRR073318	Tawny withering 1	0.189
	CRR073319	Tawny withering 2	0.670
	CRR073320	Tawny withering 3	0.974