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Detail information of GWHGAAZE017686
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_007037981.1
0
Serine/threonine-protein kinase Rio1 [Theobroma cacao]
trEMBL
tr|A0A061FZY8|A0A061FZY8_THECC
0
Serine/threonine-protein kinase RIO1 {ECO:0000256|PIRNR:PIRNR038147}
TAIR10
AT5G37350.1
0
Serine/threonine-protein kinase Rio1
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000005
gene
9637342
9643426
+
GWHAAZE00000005
mRNA
9637342
9643426
+
GWHAAZE00000005
exon
9637342
9637563
+
GWHAAZE00000005
exon
9637891
9638019
+
GWHAAZE00000005
exon
9638530
9638622
+
GWHAAZE00000005
exon
9638819
9638898
+
GWHAAZE00000005
exon
9640118
9640231
+
GWHAAZE00000005
exon
9640500
9640573
+
GWHAAZE00000005
exon
9641412
9641488
+
GWHAAZE00000005
exon
9641858
9641941
+
GWHAAZE00000005
exon
9642041
9642133
+
GWHAAZE00000005
exon
9642255
9642362
+
GWHAAZE00000005
exon
9642788
9642862
+
GWHAAZE00000005
exon
9642995
9643426
+
GWHAAZE00000005
CDS
9637342
9637563
+
GWHAAZE00000005
CDS
9637891
9638019
+
GWHAAZE00000005
CDS
9638530
9638622
+
GWHAAZE00000005
CDS
9638819
9638898
+
GWHAAZE00000005
CDS
9640118
9640231
+
GWHAAZE00000005
CDS
9640500
9640573
+
GWHAAZE00000005
CDS
9641412
9641488
+
GWHAAZE00000005
CDS
9641858
9641941
+
GWHAAZE00000005
CDS
9642041
9642133
+
GWHAAZE00000005
CDS
9642255
9642362
+
GWHAAZE00000005
CDS
9642788
9642862
+
GWHAAZE00000005
CDS
9642995
9643426
+
Transcript Sequence
>GWHTAAZE017706 ATGAAGAGCTTTTATTATCGTCCTGACTCTGAAATTGGTGACGCTTTGGATTATTTGGATTCGAAGGATGACACGGAAGCGGTGGATGGAGCTTTTAGTCTAAATTCGAGGCGTCCAAATGCTCATGGAGGGATTCACTCTCGCCCAAATGCATCGGCTCTTCAACCTCTCTCGAATCGGATGCAGAGGTTTCAACATCACATAAGAGCTTCACCTTTAGAGGAGTGGGAGGGCAGGGTCAATGTTGGCATGTCGAACTCGGTGACAACTGCAATTCGTGGAAGTGTTCGAGATATGGCCATTGGTAAAACTAAAACTACTGAGAAAGCAGACCGTGCGACTGTTGAACAGGCAATTGACCCTAGAACTCGTATGGTTCTATTCAAAATGCTGAATCGAGGTGAATTCAGTGATATCAATGGCTGCATTTCAACTGGGAAAGAAGCTAATGTTTATCATGCTACAAAAAGTGGTGGTCAGGAACTGGCAATCAAAGTGTACAAAACTTCCGTTCTCGTTTTTAAGGATAGGGATCGGTATGTACAAGGTGACTACCGTTTCAGACATGGATATTGCAGGCACAATCCCCGGAAAATGGTTAGAACATGGGCTGAGAAAGAAAGGAGGAATCTTATGAGGTTAAAGGCAGCAGGAATCCCATGCCCAGAGACACATATTTTGAGGCATCATGTTCTGGTCATGGACTTCATAGGCAAGGCAGGTTGGGCTGCGCCTCGACTTAAAGATGCTGCTTTATCTCTTGACAAATTACGTGAATGTTATAGGGAGATGGTTATGATAATGCGGGTATTATATCAAAAATGCAAGCTGGTTCATGGAGATCTCAGTGAATATAACATACTATACTATGAGGGTCAATTGTATATTATTGATGTATCCCAATCAGTTGATCTGGACCACCCTCATGCCCTCGATTTCCTCCGCGAGGATTCTGTTCATGTTTCCGATTTCTTTAGAAAACATGGAGTAGGTGTCATGACGATTCGGGAATTGTTTGATTTCATAGTTGATCCAACCATTGAAGAAGATTCCGTTGACAAATATCTTGAAGCGGTTGAACAAAAGATTTTGGCAAGAGGGAATGAAATTTCTGCCGAGGATGAAATTGCAGACTCTGTGTTTGTTCAGTCATACATTCCAAAGACACTAGATGATGTGAAGAATGCTGAGGAAGACGTTATACGTTTAACTAGCGGCAAAGACACCAAAGATATGTACTACAAGACTATCACTGGACTCAATCAAGCTCTTTCTATGTCATCGGAAAAGGAGTTGAATCAGCCCGAAAGAAACCTTTTACCTGCTGATGATCCCACTGGGCATTCTGATAGTGAATCAGAGACCAACACATCAGCAGATGAAGGTGAGGACAAGTTGAGCGAGGCTGAAGAGGATGGTTCCTTTTCAGATGAAACAGAGACACTGGCAGATAAAAAGGCTGCGAGGAAAGAGAACAAAAAGAAAGTTAAAGAAGAGAAGAGGGAGGCGCGGAAGACCAAAGTACCCAAAGCCGTGAAGAAGAAAAAGAAGAAGTTGGCCAAGGCTAAGAAATATAGGTAA
Network for GWHGAAZE017686
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF01163.23
RIO1
150
337
6.70E-73
Protein Sequence
>GWHPAAZE017696 MKSFYYRPDSEIGDALDYLDSKDDTEAVDGAFSLNSRRPNAHGGIHSRPNASALQPLSNRMQRFQHHIRASPLEEWEGRVNVGMSNSVTTAIRGSVRDMAIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGEFSDINGCISTGKEANVYHATKSGGQELAIKVYKTSVLVFKDRDRYVQGDYRFRHGYCRHNPRKMVRTWAEKERRNLMRLKAAGIPCPETHILRHHVLVMDFIGKAGWAAPRLKDAALSLDKLRECYREMVMIMRVLYQKCKLVHGDLSEYNILYYEGQLYIIDVSQSVDLDHPHALDFLREDSVHVSDFFRKHGVGVMTIRELFDFIVDPTIEEDSVDKYLEAVEQKILARGNEISAEDEIADSVFVQSYIPKTLDDVKNAEEDVIRLTSGKDTKDMYYKTITGLNQALSMSSEKELNQPERNLLPADDPTGHSDSESETNTSADEGEDKLSEAEEDGSFSDETETLADKKAARKENKKKVKEEKREARKTKVPKAVKKKKKKLAKAKKYR
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K07178
RIOK1
Ribosome biogenesis in eukaryotes
map03008
Gene Ontology
GO term
Ontology
Name
GO:0004674
molecular_function
protein serine/threonine kinase activity
GO:0005524
molecular_function
ATP binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
13.897
SRR3591706
second leaf
14.242
SRR3591707
mature leaf
9.849
SRR3591708
Shoot apex
15.732
SRR3591709
Stem
11.821
SRR3591710
White floral bud
10.308
SRR3591711
White flower
18.076
SRR3591712
Green floral bud
15.719
SRR3591713
Yellow flower
12.131
SRP173429
SRR8316895
Juvenile bud stage
17.388
SRR8316896
Juvenile bud stage
24.860
SRR8316897
Juvenile bud stage
11.637
SRR8316894
Third green stage
7.686
SRR8316900
Third green stage
11.458
SRR8316901
Third green stage
10.990
SRR8316898
Complete white stage
1.381
SRR8316899
Complete white stage
14.086
SRR8316903
Complete white stage
3.126
SRR8316902
Silver flowering stage
2.742
SRR8316904
Silver flowering stage
3.095
SRR8316905
Silver flowering stage
1.085
SRR8316906
Gold flowering stage
5.207
SRR8316907
Gold flowering stage
3.909
SRR8316908
Gold flowering stage
6.059
SRP132670
SRR6706286
Control
7.190
SRR6706287
Light intensity 50%
7.060
SRR6706288
Light intensity 20%
7.635
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
13.156
CNS0095593
Slightly white alabastrum(diploid) 2
14.056
CNS0095594
Slightly white alabastrum(diploid) 3
15.307
CNS0095595
Whole white alabastrum(diploid) 2
11.284
CNS0095596
Whole white alabastrum(diploid) 3
7.376
CNS0095597
Whole white alabastrum(diploid) 4
5.582
CNS0095598
Silvery flower (diploied) 1
13.265
CNS0095599
Silvery flower (diploied) 2
9.156
CNS0095600
Silvery flower (diploied) 3
5.349
CNS0095601
Golden flower (diploid) 1
5.072
CNS0095602
Golden flower (diploid) 2
6.435
CNS0095603
Golden flower (diploid) 3
6.320
CNS0095604
Slightly white alabastrum(tetraploid) 1
9.927
CNS0095605
Slightly white alabastrum(tetraploid) 2
8.760
CNS0095606
Slightly white alabastrum(tetraploid) 3
13.473
CNS0095607
Whole white alabastrum(tetraploid) 1
4.874
CNS0095608
Whole white alabastrum(tetraploid) 2
3.108
CNS0095609
Whole white alabastrum(tetraploid) 3
8.040
CNS0095610
Silvery flower (tetraploid) 1
6.181
CNS0095611
Silvery flower (tetraploid) 2
5.716
CNS0095612
Silvery flower (tetraploid) 3
3.780
CNS0095613
Golden flower (tetraploid) 1
3.344
CNS0095614
Golden flower (tetraploid) 2
6.363
CNS0095615
Golden flower (tetraploid) 3
1.799
CRA001975
CRR073297
Stem 1
15.723
CRR073298
Stem 2
13.167
CRR073299
Stem 3
8.970
CRR073300
Leaf 1
6.736
CRR073301
Leaf 2
6.987
CRR073302
Leaf 3
3.849
CRR073303
Juvenile bud 1
4.256
CRR073304
Juvenile bud 2
2.710
CRR073305
Juvenile bud 3
5.447
CRR073306
Third green 1
0.523
CRR073307
Third green 2
0.590
CRR073308
Third green 3
0.793
CRR073309
Second white 1
1.952
CRR073310
Second white 2
2.101
CRR073311
Second white 3
1.436
CRR073312
Silver flowering 1
2.041
CRR073313
Silver flowering 2
1.237
CRR073314
Silver flowering 3
1.281
CRR073315
Gold flowering 1
3.911
CRR073316
Gold flowering 2
4.421
CRR073317
Gold flowering 3
2.202
CRR073318
Tawny withering 1
9.816
CRR073319
Tawny withering 2
11.766
CRR073320
Tawny withering 3
8.008