Detail information of GWHGAAZE017686


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007037981.10Serine/threonine-protein kinase Rio1 [Theobroma cacao]
trEMBLtr|A0A061FZY8|A0A061FZY8_THECC0Serine/threonine-protein kinase RIO1 {ECO:0000256|PIRNR:PIRNR038147}
TAIR10AT5G37350.10Serine/threonine-protein kinase Rio1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene96373429643426+
GWHAAZE00000005mRNA96373429643426+
GWHAAZE00000005exon96373429637563+
GWHAAZE00000005exon96378919638019+
GWHAAZE00000005exon96385309638622+
GWHAAZE00000005exon96388199638898+
GWHAAZE00000005exon96401189640231+
GWHAAZE00000005exon96405009640573+
GWHAAZE00000005exon96414129641488+
GWHAAZE00000005exon96418589641941+
GWHAAZE00000005exon96420419642133+
GWHAAZE00000005exon96422559642362+
GWHAAZE00000005exon96427889642862+
GWHAAZE00000005exon96429959643426+
GWHAAZE00000005CDS96373429637563+
GWHAAZE00000005CDS96378919638019+
GWHAAZE00000005CDS96385309638622+
GWHAAZE00000005CDS96388199638898+
GWHAAZE00000005CDS96401189640231+
GWHAAZE00000005CDS96405009640573+
GWHAAZE00000005CDS96414129641488+
GWHAAZE00000005CDS96418589641941+
GWHAAZE00000005CDS96420419642133+
GWHAAZE00000005CDS96422559642362+
GWHAAZE00000005CDS96427889642862+
GWHAAZE00000005CDS96429959643426+
Transcript Sequence

Network for GWHGAAZE017686

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01163.23RIO11503376.70E-73
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07178RIOK1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.897
SRR3591706second leaf14.242
SRR3591707mature leaf9.849
SRR3591708Shoot apex15.732
SRR3591709Stem11.821
SRR3591710White floral bud10.308
SRR3591711White flower18.076
SRR3591712Green floral bud15.719
SRR3591713Yellow flower12.131
SRP173429 SRR8316895Juvenile bud stage 17.388
SRR8316896Juvenile bud stage 24.860
SRR8316897Juvenile bud stage 11.637
SRR8316894Third green stage 7.686
SRR8316900Third green stage 11.458
SRR8316901Third green stage 10.990
SRR8316898Complete white stage 1.381
SRR8316899Complete white stage 14.086
SRR8316903Complete white stage 3.126
SRR8316902Silver flowering stage2.742
SRR8316904Silver flowering stage3.095
SRR8316905Silver flowering stage1.085
SRR8316906Gold flowering stage 5.207
SRR8316907Gold flowering stage 3.909
SRR8316908Gold flowering stage 6.059
SRP132670SRR6706286Control7.190
SRR6706287Light intensity 50%7.060
SRR6706288Light intensity 20%7.635
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.156
CNS0095593Slightly white alabastrum(diploid) 214.056
CNS0095594Slightly white alabastrum(diploid) 315.307
CNS0095595Whole white alabastrum(diploid) 211.284
CNS0095596Whole white alabastrum(diploid) 37.376
CNS0095597Whole white alabastrum(diploid) 45.582
CNS0095598Silvery flower (diploied) 113.265
CNS0095599Silvery flower (diploied) 29.156
CNS0095600Silvery flower (diploied) 35.349
CNS0095601Golden flower (diploid) 15.072
CNS0095602Golden flower (diploid) 26.435
CNS0095603Golden flower (diploid) 36.320
CNS0095604Slightly white alabastrum(tetraploid) 19.927
CNS0095605Slightly white alabastrum(tetraploid) 28.760
CNS0095606Slightly white alabastrum(tetraploid) 313.473
CNS0095607Whole white alabastrum(tetraploid) 14.874
CNS0095608Whole white alabastrum(tetraploid) 23.108
CNS0095609Whole white alabastrum(tetraploid) 38.040
CNS0095610Silvery flower (tetraploid) 16.181
CNS0095611Silvery flower (tetraploid) 25.716
CNS0095612Silvery flower (tetraploid) 33.780
CNS0095613Golden flower (tetraploid) 13.344
CNS0095614Golden flower (tetraploid) 26.363
CNS0095615Golden flower (tetraploid) 31.799
CRA001975CRR073297Stem 115.723
CRR073298Stem 213.167
CRR073299Stem 38.970
CRR073300Leaf 16.736
CRR073301Leaf 26.987
CRR073302Leaf 33.849
CRR073303Juvenile bud 14.256
CRR073304Juvenile bud 22.710
CRR073305Juvenile bud 35.447
CRR073306Third green 10.523
CRR073307Third green 20.590
CRR073308Third green 30.793
CRR073309Second white 11.952
CRR073310Second white 22.101
CRR073311Second white 31.436
CRR073312Silver flowering 12.041
CRR073313Silver flowering 21.237
CRR073314Silver flowering 31.281
CRR073315Gold flowering 13.911
CRR073316Gold flowering 24.421
CRR073317Gold flowering 32.202
CRR073318Tawny withering 19.816
CRR073319Tawny withering 211.766
CRR073320Tawny withering 38.008