Detail information of GWHGAAZE017639


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009786911.10PREDICTED: V-type proton ATPase subunit C [Nicotiana sylvestris]
Swissprottr|Q9SDS7|VATC_ARATH0V-type proton ATPase subunit C
trEMBLtr|A0A068V5A9|A0A068V5A9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_105 {ECO:0000313|EMBL:CDP15722.1}
TAIR10AT1G12840.12E-173vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene90490819057244-
GWHAAZE00000005mRNA90490819057244-
GWHAAZE00000005exon90571319057244-
GWHAAZE00000005exon90569589057026-
GWHAAZE00000005exon90567529056879-
GWHAAZE00000005exon90565679056666-
GWHAAZE00000005exon90532719053338-
GWHAAZE00000005exon90522719052412-
GWHAAZE00000005exon90519529052068-
GWHAAZE00000005exon90516349051759-
GWHAAZE00000005exon90512099051292-
GWHAAZE00000005exon90509799051058-
GWHAAZE00000005exon90490819049177-
GWHAAZE00000005CDS90571319057244-
GWHAAZE00000005CDS90569589057026-
GWHAAZE00000005CDS90567529056879-
GWHAAZE00000005CDS90565679056666-
GWHAAZE00000005CDS90532719053338-
GWHAAZE00000005CDS90522719052412-
GWHAAZE00000005CDS90519529052068-
GWHAAZE00000005CDS90516349051759-
GWHAAZE00000005CDS90512099051292-
GWHAAZE00000005CDS90509799051058-
GWHAAZE00000005CDS90490819049177-
Transcript Sequence

Network for GWHGAAZE017639

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03223.16V-ATPase_C53675.30E-124
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02148ATPeV1C, ATP6C Metabolic pathways map01100
Oxidative phosphorylationmap00190
mTOR signaling pathwaymap04150
Phagosomemap04145
Collecting duct acid secretionmap04966
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:1902600biological_processproton transmembrane transport
GO:0033180cellular_componentproton-transporting V-type ATPase, V1 domain
GO:0015078molecular_functionproton transmembrane transporter activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf170.393
SRR3591706second leaf73.844
SRR3591707mature leaf36.351
SRR3591708Shoot apex101.385
SRR3591709Stem91.289
SRR3591710White floral bud102.746
SRR3591711White flower85.709
SRR3591712Green floral bud153.760
SRR3591713Yellow flower87.803
SRP173429 SRR8316895Juvenile bud stage 81.530
SRR8316896Juvenile bud stage 116.010
SRR8316897Juvenile bud stage 60.733
SRR8316894Third green stage 60.787
SRR8316900Third green stage 177.692
SRR8316901Third green stage 165.890
SRR8316898Complete white stage 56.832
SRR8316899Complete white stage 153.620
SRR8316903Complete white stage 85.433
SRR8316902Silver flowering stage47.411
SRR8316904Silver flowering stage61.809
SRR8316905Silver flowering stage30.231
SRR8316906Gold flowering stage 111.952
SRR8316907Gold flowering stage 108.076
SRR8316908Gold flowering stage 117.115
SRP132670SRR6706286Control116.885
SRR6706287Light intensity 50%129.331
SRR6706288Light intensity 20%145.848
CNP0000432CNS0095592Slightly white alabastrum(diploid) 196.229
CNS0095593Slightly white alabastrum(diploid) 2112.385
CNS0095594Slightly white alabastrum(diploid) 393.838
CNS0095595Whole white alabastrum(diploid) 2106.906
CNS0095596Whole white alabastrum(diploid) 3116.663
CNS0095597Whole white alabastrum(diploid) 4100.283
CNS0095598Silvery flower (diploied) 161.496
CNS0095599Silvery flower (diploied) 267.404
CNS0095600Silvery flower (diploied) 3104.957
CNS0095601Golden flower (diploid) 154.961
CNS0095602Golden flower (diploid) 294.047
CNS0095603Golden flower (diploid) 390.360
CNS0095604Slightly white alabastrum(tetraploid) 1125.696
CNS0095605Slightly white alabastrum(tetraploid) 2106.644
CNS0095606Slightly white alabastrum(tetraploid) 3174.470
CNS0095607Whole white alabastrum(tetraploid) 189.601
CNS0095608Whole white alabastrum(tetraploid) 2104.435
CNS0095609Whole white alabastrum(tetraploid) 3163.512
CNS0095610Silvery flower (tetraploid) 196.065
CNS0095611Silvery flower (tetraploid) 2104.389
CNS0095612Silvery flower (tetraploid) 3112.758
CNS0095613Golden flower (tetraploid) 168.018
CNS0095614Golden flower (tetraploid) 286.613
CNS0095615Golden flower (tetraploid) 379.775
CRA001975CRR073297Stem 1201.535
CRR073298Stem 2193.504
CRR073299Stem 3221.573
CRR073300Leaf 1262.318
CRR073301Leaf 2227.718
CRR073302Leaf 3327.709
CRR073303Juvenile bud 1309.334
CRR073304Juvenile bud 2308.965
CRR073305Juvenile bud 3246.700
CRR073306Third green 1153.030
CRR073307Third green 2148.243
CRR073308Third green 3137.224
CRR073309Second white 1151.862
CRR073310Second white 2133.063
CRR073311Second white 3107.750
CRR073312Silver flowering 1102.141
CRR073313Silver flowering 2105.544
CRR073314Silver flowering 392.042
CRR073315Gold flowering 192.548
CRR073316Gold flowering 2111.282
CRR073317Gold flowering 383.642
CRR073318Tawny withering 1178.256
CRR073319Tawny withering 2131.259
CRR073320Tawny withering 3199.099