Detail information of GWHGAAZE017629


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFP25102.10ICE1 [Camellia sinensis]
Swissprottr|Q9LSE2|ICE1_ARATH3E-144Transcription factor ICE1
trEMBLtr|I7EMG7|I7EMG7_CAMSI0ICE1 {ECO:0000313|EMBL:AFP25102.1}
TAIR10AT3G26744.42E-106basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene88384178842093-
GWHAAZE00000005mRNA88384178842093-
GWHAAZE00000005exon88384178838745-
GWHAAZE00000005exon88394728839642-
GWHAAZE00000005exon88399498840173-
GWHAAZE00000005exon88411318842093-
GWHAAZE00000005CDS88411318842093-
GWHAAZE00000005CDS88399498840173-
GWHAAZE00000005CDS88394728839642-
GWHAAZE00000005CDS88386628838745-
GWHAAZE00000005three_prime_UTR88384178838661-
Transcript Sequence

Network for GWHGAAZE017629

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.27HLH2963381.70E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.074
SRR3591706second leaf67.705
SRR3591707mature leaf16.192
SRR3591708Shoot apex88.454
SRR3591709Stem12.927
SRR3591710White floral bud18.920
SRR3591711White flower7.672
SRR3591712Green floral bud41.552
SRR3591713Yellow flower10.111
SRP173429 SRR8316895Juvenile bud stage 42.481
SRR8316896Juvenile bud stage 45.808
SRR8316897Juvenile bud stage 24.391
SRR8316894Third green stage 17.323
SRR8316900Third green stage 35.036
SRR8316901Third green stage 33.581
SRR8316898Complete white stage 4.047
SRR8316899Complete white stage 31.756
SRR8316903Complete white stage 8.445
SRR8316902Silver flowering stage1.108
SRR8316904Silver flowering stage1.948
SRR8316905Silver flowering stage0.499
SRR8316906Gold flowering stage 2.996
SRR8316907Gold flowering stage 1.731
SRR8316908Gold flowering stage 3.141
SRP132670SRR6706286Control30.309
SRR6706287Light intensity 50%33.185
SRR6706288Light intensity 20%39.672
CNP0000432CNS0095592Slightly white alabastrum(diploid) 136.543
CNS0095593Slightly white alabastrum(diploid) 234.074
CNS0095594Slightly white alabastrum(diploid) 329.906
CNS0095595Whole white alabastrum(diploid) 220.931
CNS0095596Whole white alabastrum(diploid) 317.593
CNS0095597Whole white alabastrum(diploid) 416.288
CNS0095598Silvery flower (diploied) 110.964
CNS0095599Silvery flower (diploied) 29.116
CNS0095600Silvery flower (diploied) 33.499
CNS0095601Golden flower (diploid) 18.670
CNS0095602Golden flower (diploid) 25.082
CNS0095603Golden flower (diploid) 35.482
CNS0095604Slightly white alabastrum(tetraploid) 142.570
CNS0095605Slightly white alabastrum(tetraploid) 233.161
CNS0095606Slightly white alabastrum(tetraploid) 380.332
CNS0095607Whole white alabastrum(tetraploid) 115.661
CNS0095608Whole white alabastrum(tetraploid) 211.149
CNS0095609Whole white alabastrum(tetraploid) 330.952
CNS0095610Silvery flower (tetraploid) 11.488
CNS0095611Silvery flower (tetraploid) 23.992
CNS0095612Silvery flower (tetraploid) 32.511
CNS0095613Golden flower (tetraploid) 12.614
CNS0095614Golden flower (tetraploid) 22.051
CNS0095615Golden flower (tetraploid) 32.139
CRA001975CRR073297Stem 195.198
CRR073298Stem 287.061
CRR073299Stem 395.410
CRR073300Leaf 156.992
CRR073301Leaf 256.293
CRR073302Leaf 354.102
CRR073303Juvenile bud 153.976
CRR073304Juvenile bud 256.397
CRR073305Juvenile bud 369.542
CRR073306Third green 12.995
CRR073307Third green 23.563
CRR073308Third green 34.727
CRR073309Second white 10.353
CRR073310Second white 20.674
CRR073311Second white 30.814
CRR073312Silver flowering 12.637
CRR073313Silver flowering 23.051
CRR073314Silver flowering 34.276
CRR073315Gold flowering 117.959
CRR073316Gold flowering 223.360
CRR073317Gold flowering 324.078
CRR073318Tawny withering 18.971
CRR073319Tawny withering 26.552
CRR073320Tawny withering 37.179