Detail information of GWHGAAZE017502


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011073436.10PREDICTED: phospholipase D alpha 1 [Sesamum indicum]
Swissprottr|O04865|PLDA1_VIGUN0Phospholipase D alpha 1
trEMBLtr|A0A068TPA0|A0A068TPA0_COFCA0Phospholipase D {ECO:0000256|PIRNR:PIRNR036470}
TAIR10AT3G15730.10phospholipase D alpha 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene71032757104885+
GWHAAZE00000005mRNA71032757104885+
GWHAAZE00000005exon71032757103914+
GWHAAZE00000005exon71044527104885+
GWHAAZE00000005CDS71032757103914+
GWHAAZE00000005CDS71044527104885+
Transcript Sequence

Network for GWHGAAZE017502

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00614.23PLDc2042305.80E-08
PF12357.9PLD_C2753477.80E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01115PLD1_2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Parathyroid hormone synthesis, secretion and actionmap04928
Glutamatergic synapsemap04724

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.586
SRR3591706second leaf0.175
SRR3591707mature leaf0.096
SRR3591708Shoot apex2.829
SRR3591709Stem0.946
SRR3591710White floral bud3.385
SRR3591711White flower0.308
SRR3591712Green floral bud143.154
SRR3591713Yellow flower0.112
SRP173429 SRR8316895Juvenile bud stage 20.395
SRR8316896Juvenile bud stage 154.756
SRR8316897Juvenile bud stage 86.921
SRR8316894Third green stage 58.076
SRR8316900Third green stage 197.746
SRR8316901Third green stage 239.435
SRR8316898Complete white stage 0.842
SRR8316899Complete white stage 2.096
SRR8316903Complete white stage 0.738
SRR8316902Silver flowering stage0.163
SRR8316904Silver flowering stage0.458
SRR8316905Silver flowering stage0.428
SRR8316906Gold flowering stage 0.023
SRR8316907Gold flowering stage 0.065
SRR8316908Gold flowering stage 0.281
SRP132670SRR6706286Control65.823
SRR6706287Light intensity 50%59.176
SRR6706288Light intensity 20%50.851
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1153.001
CNS0095593Slightly white alabastrum(diploid) 2109.293
CNS0095594Slightly white alabastrum(diploid) 3184.938
CNS0095595Whole white alabastrum(diploid) 2165.402
CNS0095596Whole white alabastrum(diploid) 3219.073
CNS0095597Whole white alabastrum(diploid) 4140.517
CNS0095598Silvery flower (diploied) 12.253
CNS0095599Silvery flower (diploied) 21.216
CNS0095600Silvery flower (diploied) 30.215
CNS0095601Golden flower (diploid) 11.939
CNS0095602Golden flower (diploid) 20.517
CNS0095603Golden flower (diploid) 30.735
CNS0095604Slightly white alabastrum(tetraploid) 1288.089
CNS0095605Slightly white alabastrum(tetraploid) 2261.837
CNS0095606Slightly white alabastrum(tetraploid) 35.036
CNS0095607Whole white alabastrum(tetraploid) 1316.422
CNS0095608Whole white alabastrum(tetraploid) 2304.786
CNS0095609Whole white alabastrum(tetraploid) 3237.395
CNS0095610Silvery flower (tetraploid) 10.421
CNS0095611Silvery flower (tetraploid) 20.907
CNS0095612Silvery flower (tetraploid) 31.258
CNS0095613Golden flower (tetraploid) 10.339
CNS0095614Golden flower (tetraploid) 20.460
CNS0095615Golden flower (tetraploid) 30.835
CRA001975CRR073297Stem 142.229
CRR073298Stem 274.356
CRR073299Stem 342.940
CRR073300Leaf 1101.946
CRR073301Leaf 2113.896
CRR073302Leaf 393.680
CRR073303Juvenile bud 154.046
CRR073304Juvenile bud 246.516
CRR073305Juvenile bud 35.110
CRR073306Third green 10.756
CRR073307Third green 21.017
CRR073308Third green 30.639
CRR073309Second white 10.044
CRR073310Second white 20.349
CRR073311Second white 30.587
CRR073312Silver flowering 11.370
CRR073313Silver flowering 21.596
CRR073314Silver flowering 30.302
CRR073315Gold flowering 11.549
CRR073316Gold flowering 20.049
CRR073317Gold flowering 30.686
CRR073318Tawny withering 10.846
CRR073319Tawny withering 21.267
CRR073320Tawny withering 30.966