Detail information of GWHGAAZE017497


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009392978.11.50035E-30PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q0JM17|RH56_ORYSJ2E-21DEAD-box ATP-dependent RNA helicase 56
trEMBLtr|M0SHW6|M0SHW6_MUSAM2E-33Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P26000_001}
TAIR10AT5G11170.12E-18DEAD/DEAH box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene70499247051490-
GWHAAZE00000005mRNA70499247051490-
GWHAAZE00000005exon70513917051490-
GWHAAZE00000005exon70499247050120-
GWHAAZE00000005CDS70513917051490-
GWHAAZE00000005CDS70499247050120-
Transcript Sequence

Network for GWHGAAZE017497

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12812DDX39B, UAP56, SUB2 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf62.053
SRR3591706second leaf44.793
SRR3591707mature leaf34.570
SRR3591708Shoot apex80.756
SRR3591709Stem47.945
SRR3591710White floral bud69.785
SRR3591711White flower85.555
SRR3591712Green floral bud58.212
SRR3591713Yellow flower68.314
SRP173429 SRR8316895Juvenile bud stage 36.308
SRR8316896Juvenile bud stage 50.410
SRR8316897Juvenile bud stage 19.412
SRR8316894Third green stage 22.946
SRR8316900Third green stage 58.340
SRR8316901Third green stage 65.580
SRR8316898Complete white stage 39.624
SRR8316899Complete white stage 75.748
SRR8316903Complete white stage 56.591
SRR8316902Silver flowering stage43.915
SRR8316904Silver flowering stage50.311
SRR8316905Silver flowering stage23.843
SRR8316906Gold flowering stage 77.617
SRR8316907Gold flowering stage 82.319
SRR8316908Gold flowering stage 86.689
SRP132670SRR6706286Control71.494
SRR6706287Light intensity 50%80.732
SRR6706288Light intensity 20%93.086
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.752
CNS0095593Slightly white alabastrum(diploid) 223.193
CNS0095594Slightly white alabastrum(diploid) 320.491
CNS0095595Whole white alabastrum(diploid) 221.451
CNS0095596Whole white alabastrum(diploid) 321.483
CNS0095597Whole white alabastrum(diploid) 417.896
CNS0095598Silvery flower (diploied) 138.055
CNS0095599Silvery flower (diploied) 240.897
CNS0095600Silvery flower (diploied) 358.515
CNS0095601Golden flower (diploid) 136.078
CNS0095602Golden flower (diploid) 251.355
CNS0095603Golden flower (diploid) 348.315
CNS0095604Slightly white alabastrum(tetraploid) 126.502
CNS0095605Slightly white alabastrum(tetraploid) 220.461
CNS0095606Slightly white alabastrum(tetraploid) 359.374
CNS0095607Whole white alabastrum(tetraploid) 114.557
CNS0095608Whole white alabastrum(tetraploid) 27.614
CNS0095609Whole white alabastrum(tetraploid) 341.410
CNS0095610Silvery flower (tetraploid) 155.054
CNS0095611Silvery flower (tetraploid) 243.278
CNS0095612Silvery flower (tetraploid) 344.724
CNS0095613Golden flower (tetraploid) 120.423
CNS0095614Golden flower (tetraploid) 235.742
CNS0095615Golden flower (tetraploid) 345.560
CRA001975CRR073297Stem 158.187
CRR073298Stem 254.692
CRR073299Stem 362.856
CRR073300Leaf 179.579
CRR073301Leaf 265.604
CRR073302Leaf 378.104
CRR073303Juvenile bud 156.793
CRR073304Juvenile bud 261.498
CRR073305Juvenile bud 360.812
CRR073306Third green 181.923
CRR073307Third green 258.813
CRR073308Third green 366.252
CRR073309Second white 140.269
CRR073310Second white 251.212
CRR073311Second white 333.677
CRR073312Silver flowering 148.224
CRR073313Silver flowering 247.446
CRR073314Silver flowering 339.937
CRR073315Gold flowering 144.273
CRR073316Gold flowering 253.427
CRR073317Gold flowering 355.082
CRR073318Tawny withering 150.569
CRR073319Tawny withering 240.704
CRR073320Tawny withering 345.469