Gene detail

Detail information of GWHGAAZE017495

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006465486.1	0	PREDICTED: probable polygalacturonase At3g15720-like [Citrus sinensis]
Swissprot	tr\|Q9LW07\|PGLR3_ARATH	2E-88	Probable polygalacturonase At3g15720 (Precursor)
trEMBL	tr\|K7M3Y0\|K7M3Y0_SOYBN	2E-139	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G44140.2}
TAIR10	AT3G15720.1	3E-78	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	7023457	7030500	-
GWHAAZE00000005	mRNA	7023457	7030500	-
GWHAAZE00000005	exon	7023457	7023687	-
GWHAAZE00000005	exon	7023758	7023874	-
GWHAAZE00000005	exon	7023950	7024055	-
GWHAAZE00000005	exon	7024164	7024245	-
GWHAAZE00000005	exon	7024404	7024638	-
GWHAAZE00000005	exon	7024734	7024757	-
GWHAAZE00000005	exon	7024935	7025126	-
GWHAAZE00000005	exon	7025267	7025347	-
GWHAAZE00000005	exon	7025549	7025640	-
GWHAAZE00000005	exon	7026153	7026273	-
GWHAAZE00000005	exon	7027705	7027854	-
GWHAAZE00000005	exon	7028225	7028333	-
GWHAAZE00000005	exon	7028440	7028521	-
GWHAAZE00000005	exon	7028717	7028924	-
GWHAAZE00000005	exon	7029078	7029152	-
GWHAAZE00000005	exon	7029667	7029846	-
GWHAAZE00000005	exon	7030103	7030229	-
GWHAAZE00000005	exon	7030313	7030500	-
GWHAAZE00000005	CDS	7030313	7030500	-
GWHAAZE00000005	CDS	7030103	7030229	-
GWHAAZE00000005	CDS	7029667	7029846	-
GWHAAZE00000005	CDS	7029078	7029152	-
GWHAAZE00000005	CDS	7028717	7028924	-
GWHAAZE00000005	CDS	7028440	7028521	-
GWHAAZE00000005	CDS	7028225	7028333	-
GWHAAZE00000005	CDS	7027705	7027854	-
GWHAAZE00000005	CDS	7026153	7026273	-
GWHAAZE00000005	CDS	7025549	7025640	-
GWHAAZE00000005	CDS	7025267	7025347	-
GWHAAZE00000005	CDS	7024935	7025126	-
GWHAAZE00000005	CDS	7024734	7024757	-
GWHAAZE00000005	CDS	7024404	7024638	-
GWHAAZE00000005	CDS	7024164	7024245	-
GWHAAZE00000005	CDS	7023950	7024055	-
GWHAAZE00000005	CDS	7023758	7023874	-
GWHAAZE00000005	CDS	7023457	7023687	-

Transcript Sequence
>GWHTAAZE017515 ATGATGAACCCTCAAAATCTCAATGTGCAGGATAAATCTGCTAAGTGGACACTTGTTCTGAGTCTGGTTATGGCAATCTTGATTCGCACCGAATCCAAAACTGGAAAAAATGTATTTAATGTTGTAGACTATGGAGCTGTTGGTGATGGCAACACAAATGATACACAAGTGCTGTTTCTACCTTTTATGACATGGAACTGTACATGTAATGCTGAGGGAGAAAAGGCAAAGATGATTATCCCACGTGGAAAAACATTTTTGGTGTATCCCTTAACATTGGCTGGCCCTTGCAATCTCAATTACATCAACATTGTGATATCAGGGAAGATAATAGCACCCAAGAGTCCAGAGGAGGGATGGAAGAGAAGAAAACAGCAGGGGAGGTGGCTAATTATTAGGGATGTGAAGGGTCTCAATATTAGTGGGTCTGGCTTACTGGATGGACGTGGTAACGGTTGGTGGGATATCTTGTGCACAACTCATCCTCAACTCCTGTATTACGTACTGACTTTTGAATATCACCAACGTAACTCAATGTTTGGACAGGGATGTGTCAACCTTGCACCAACGGTGCTCAGTTTAGTGGAGTGTAATGAAGTTTATATGGGCAACCTCACGTTTTTAAATAGCCCTCAAACTCATATCCTCGTTATGGGATGCAACCATGTCAATTTTACATTTTTGACCATAGATTGCCCTGGATCTACACCCAACACTGATGGTATTCACCTTCAAAATTCCCACCGAGTCTCTATTCACAGCACAAACATTGGCAGTGGTGACGATTGTATATCTATTGGAGATCATACTTCAGACATATACATCGCCAATGTTAACTGTGGACCAGGCCACGGTGTAAGCATTGGAAGCTTAGGAAGGAGTGGGAATGAGGTTCTAGTAGAGAATATTACAGTGGATGGTGTTCACTTCTTCAACACAACCAATGGGTTACGGATCAAAACATGGCAGGGGAGCGGAGTCCATATAAGCGAGGTGAGATATGCAAGAACATTGGGGACATCACTAGGCGACTACGCGATAAATTTGAACTGCAGTGAGGTTGTACCTTGCACCAATATTTTATTGGAGAGGGTTGAATTGGAATCGTCAACACCAGGGTCTTGCAAGTACAATGGTGAGTCTCTTGAACTTTGGCACTTCTTATATATCTTGCCTTACATTGGCAAAAGTCCGGTATTACAGTACTCTTATCTATCATCGTTCATCACCATCACAAGAGTACTGGGCTCTACAACAAATCCCACATCCTACACTCCTTTTAATGTGCTCGATTATGGGGCAACTGGTGATGGGAAAACCGATGATTCCCAAGCTTTTCAAAAGACGTGGAAAGCAGCCTGTGATCAGGCTGAATCAGATGCTCCTCCTAGCCTTGTTATTCCAACAAAAATCTACCGTATCCATATTATATATATACAGTTATCAGGGAAGATAGTTGCACCAAAAGAGAAATCAGCATGGGAGGGAGTAACCGTCAATTCGTGGCTCTCTTTTGCGAACGTAAATGGACTTACTATCAATGGCAAGGGACGGATTGATGGTCGCGGCTTTGTTTGGTGGTCTCAGCCATGCCTAAGTGGTAATGATACCGATTGCAAAGCACCAGCTCAAGCAATATATGTTTGTGTGTTTCAGGCACTAATATTCAATAGATGTCATGATCTGAAACTCAGCGGATTGACACATATGAACAGCCCAAGAGTCCATATCATATTTACCGCTTGTGAGGGTGTGATTATCTCTAATCTTTTTATCATTGCACCTGAAACAAGCCCCAACACTGACGGAATCAACATTTCTGGCTGCACCAACGTACAAATCCGAAACTCTCGCATTGAAACGGGGGATGACTGCATTGCTATTAGTGGTGGATCGTCCTATGTTAACATCACCGGTGTGATGTGCGGGCCAGGACATGGTTTTAGCATCGGAGCATTGGGAAAAGGAGGGCATGATGAGGTGGAAGAAATACATGTGAGGAACTGCACTCTAAAGGGAACGTTAACTGGAGTACGGATTAAGAGTTGGCAGGGAGGAAGCGGGTATGCGAGGAAGATCTCATTCGAAAGGATTATGTTGGTGGACGTTAACAATCCAATTATAATCGACCAGTACTACTGTCCCACTCAACTCAACTGTCAAAACTACACATCGGCAATTAAGGTGAGCGACGTAACGTATAGGGGAATATTGGGAACATCAAAGACAGACCAAGTGATTAATTTGAGTTGCAGCGAGACGGTTGCGTGCACCAACATTGTAATCGATCACGTGTACATAAAAACCACAGATCCGGCAAGGAAAGCTCAGGCTTATTGCCTTAATGCCCATGGAAGTTGGGGCCATGCTAGACCTGCTGTTAATTGCCTGCTGCCATAG

Network for GWHGAAZE017495

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	74	335	1.80E-52
PF00295.18	Glyco_hydro_28	479	783	2.00E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.062
	SRR3591706	second leaf	0.042
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.036
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.044
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.007
	SRR3591713	Yellow flower	0.022
SRP173429	SRR8316895	Juvenile bud stage	0.137
	SRR8316896	Juvenile bud stage	0.190
	SRR8316897	Juvenile bud stage	0.043
	SRR8316894	Third green stage	0.089
	SRR8316900	Third green stage	0.062
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.014
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.026
	SRR8316905	Silver flowering stage	0.035
	SRR8316906	Gold flowering stage	0.008
	SRR8316907	Gold flowering stage	0.018
	SRR8316908	Gold flowering stage	0.038
SRP132670	SRR6706286	Control	0.026
	SRR6706287	Light intensity 50%	0.021
	SRR6706288	Light intensity 20%	0.031
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.141
	CNS0095593	Slightly white alabastrum(diploid) 2	0.273
	CNS0095594	Slightly white alabastrum(diploid) 3	0.493
	CNS0095595	Whole white alabastrum(diploid) 2	0.091
	CNS0095596	Whole white alabastrum(diploid) 3	0.029
	CNS0095597	Whole white alabastrum(diploid) 4	0.129
	CNS0095598	Silvery flower (diploied) 1	0.074
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.030
	CNS0095601	Golden flower (diploid) 1	0.055
	CNS0095602	Golden flower (diploid) 2	0.013
	CNS0095603	Golden flower (diploid) 3	0.047
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.139
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.099
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.109
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.078
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.179
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.022
	CNS0095611	Silvery flower (tetraploid) 2	0.027
	CNS0095612	Silvery flower (tetraploid) 3	0.030
	CNS0095613	Golden flower (tetraploid) 1	0.059
	CNS0095614	Golden flower (tetraploid) 2	0.014
	CNS0095615	Golden flower (tetraploid) 3	0.052
CRA001975	CRR073297	Stem 1	0.025
	CRR073298	Stem 2	0.027
	CRR073299	Stem 3	0.122
	CRR073300	Leaf 1	0.031
	CRR073301	Leaf 2	0.006
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.009
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.016
	CRR073308	Third green 3	0.016
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.036
	CRR073312	Silver flowering 1	0.015
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.142
	CRR073318	Tawny withering 1	0.296
	CRR073319	Tawny withering 2	0.132
	CRR073320	Tawny withering 3	0.052