Detail information of GWHGAAZE017480


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO98120.17.04976E-46unnamed protein product [Coffea canephora]
trEMBLtr|M1CRX6|M1CRX6_SOLTU4E-48Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400073372}
TAIR10AT3G06820.22E-32Mov34/MPN/PAD-1 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene68668276867950-
GWHAAZE00000005mRNA68668276867950-
GWHAAZE00000005exon68668276866988-
GWHAAZE00000005exon68678406867950-
GWHAAZE00000005CDS68678406867950-
GWHAAZE00000005CDS68668276866988-
Transcript Sequence

Network for GWHGAAZE017480

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01398.22JAB3771.60E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM

KEGG pathway

KO Enzyme pathway mapID
K11864BRCC3, BRCC36 Homologous recombination map03440
NOD-like receptor signaling pathwaymap04621

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.683
SRR3591706second leaf12.837
SRR3591707mature leaf9.693
SRR3591708Shoot apex21.806
SRR3591709Stem20.805
SRR3591710White floral bud18.912
SRR3591711White flower19.728
SRR3591712Green floral bud21.019
SRR3591713Yellow flower19.817
SRP173429 SRR8316895Juvenile bud stage 18.142
SRR8316896Juvenile bud stage 28.155
SRR8316897Juvenile bud stage 11.054
SRR8316894Third green stage 11.350
SRR8316900Third green stage 36.067
SRR8316901Third green stage 25.413
SRR8316898Complete white stage 13.039
SRR8316899Complete white stage 41.189
SRR8316903Complete white stage 22.973
SRR8316902Silver flowering stage10.836
SRR8316904Silver flowering stage14.405
SRR8316905Silver flowering stage7.019
SRR8316906Gold flowering stage 22.156
SRR8316907Gold flowering stage 23.361
SRR8316908Gold flowering stage 17.750
SRP132670SRR6706286Control33.156
SRR6706287Light intensity 50%33.351
SRR6706288Light intensity 20%37.973
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.176
CNS0095593Slightly white alabastrum(diploid) 217.954
CNS0095594Slightly white alabastrum(diploid) 312.691
CNS0095595Whole white alabastrum(diploid) 214.596
CNS0095596Whole white alabastrum(diploid) 314.824
CNS0095597Whole white alabastrum(diploid) 414.373
CNS0095598Silvery flower (diploied) 115.408
CNS0095599Silvery flower (diploied) 214.575
CNS0095600Silvery flower (diploied) 328.562
CNS0095601Golden flower (diploid) 121.048
CNS0095602Golden flower (diploid) 227.801
CNS0095603Golden flower (diploid) 324.341
CNS0095604Slightly white alabastrum(tetraploid) 121.197
CNS0095605Slightly white alabastrum(tetraploid) 214.754
CNS0095606Slightly white alabastrum(tetraploid) 337.564
CNS0095607Whole white alabastrum(tetraploid) 113.363
CNS0095608Whole white alabastrum(tetraploid) 210.998
CNS0095609Whole white alabastrum(tetraploid) 334.316
CNS0095610Silvery flower (tetraploid) 136.086
CNS0095611Silvery flower (tetraploid) 236.819
CNS0095612Silvery flower (tetraploid) 323.351
CNS0095613Golden flower (tetraploid) 117.399
CNS0095614Golden flower (tetraploid) 231.800
CNS0095615Golden flower (tetraploid) 315.528
CRA001975CRR073297Stem 132.282
CRR073298Stem 236.449
CRR073299Stem 347.272
CRR073300Leaf 144.907
CRR073301Leaf 238.508
CRR073302Leaf 331.921
CRR073303Juvenile bud 133.984
CRR073304Juvenile bud 230.004
CRR073305Juvenile bud 340.991
CRR073306Third green 117.840
CRR073307Third green 211.775
CRR073308Third green 316.194
CRR073309Second white 111.467
CRR073310Second white 211.115
CRR073311Second white 312.810
CRR073312Silver flowering 16.856
CRR073313Silver flowering 210.281
CRR073314Silver flowering 35.957
CRR073315Gold flowering 112.661
CRR073316Gold flowering 228.529
CRR073317Gold flowering 313.910
CRR073318Tawny withering 115.488
CRR073319Tawny withering 213.112
CRR073320Tawny withering 325.536