Detail information of GWHGAAZE017444


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007024029.10Cyclin a2,3 [Theobroma cacao]
Swissprottr|Q2QQ96|CCA21_ORYSJ2E-163Cyclin-A2-1
trEMBLtr|A0A061GAT6|A0A061GAT6_THECC0Cyclin a2,3 {ECO:0000313|EMBL:EOY26651.1}
TAIR10AT1G80370.11E-130Cyclin A2;4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene63685596374525-
GWHAAZE00000005mRNA63685596374525-
GWHAAZE00000005exon63744896374525-
GWHAAZE00000005exon63731896373541-
GWHAAZE00000005exon63727016372965-
GWHAAZE00000005exon63722526372388-
GWHAAZE00000005exon63720816372173-
GWHAAZE00000005exon63712306371363-
GWHAAZE00000005exon63710146371089-
GWHAAZE00000005exon63706636370739-
GWHAAZE00000005exon63705296370562-
GWHAAZE00000005exon63690376369186-
GWHAAZE00000005exon63687996368933-
GWHAAZE00000005exon63685596368612-
GWHAAZE00000005five_prime_UTR63744896374525-
GWHAAZE00000005five_prime_UTR63734806373541-
GWHAAZE00000005CDS63731896373479-
GWHAAZE00000005CDS63727016372965-
GWHAAZE00000005CDS63722526372388-
GWHAAZE00000005CDS63720816372173-
GWHAAZE00000005CDS63712306371363-
GWHAAZE00000005CDS63710146371089-
GWHAAZE00000005CDS63706636370739-
GWHAAZE00000005CDS63705296370562-
GWHAAZE00000005CDS63690376369186-
GWHAAZE00000005CDS63687996368933-
GWHAAZE00000005CDS63685596368612-
Transcript Sequence

Network for GWHGAAZE017444

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00134.24Cyclin_N2223491.50E-41
PF02984.20Cyclin_C3514731.70E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06627CCNA AMPK signaling pathway map04152
Cell cyclemap04110
Cellular senescencemap04218
Progesterone-mediated oocyte maturationmap04914

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.145
SRR3591706second leaf1.188
SRR3591707mature leaf0.301
SRR3591708Shoot apex12.565
SRR3591709Stem3.815
SRR3591710White floral bud1.915
SRR3591711White flower1.466
SRR3591712Green floral bud1.122
SRR3591713Yellow flower0.310
SRP173429 SRR8316895Juvenile bud stage 3.093
SRR8316896Juvenile bud stage 5.697
SRR8316897Juvenile bud stage 1.825
SRR8316894Third green stage 1.336
SRR8316900Third green stage 3.565
SRR8316901Third green stage 4.057
SRR8316898Complete white stage 1.302
SRR8316899Complete white stage 4.913
SRR8316903Complete white stage 1.520
SRR8316902Silver flowering stage1.136
SRR8316904Silver flowering stage1.867
SRR8316905Silver flowering stage0.577
SRR8316906Gold flowering stage 2.469
SRR8316907Gold flowering stage 0.916
SRR8316908Gold flowering stage 1.582
SRP132670SRR6706286Control2.559
SRR6706287Light intensity 50%2.939
SRR6706288Light intensity 20%3.039
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.639
CNS0095593Slightly white alabastrum(diploid) 22.286
CNS0095594Slightly white alabastrum(diploid) 32.338
CNS0095595Whole white alabastrum(diploid) 21.632
CNS0095596Whole white alabastrum(diploid) 31.343
CNS0095597Whole white alabastrum(diploid) 41.602
CNS0095598Silvery flower (diploied) 12.431
CNS0095599Silvery flower (diploied) 22.824
CNS0095600Silvery flower (diploied) 32.360
CNS0095601Golden flower (diploid) 11.799
CNS0095602Golden flower (diploid) 21.880
CNS0095603Golden flower (diploid) 31.586
CNS0095604Slightly white alabastrum(tetraploid) 13.370
CNS0095605Slightly white alabastrum(tetraploid) 22.211
CNS0095606Slightly white alabastrum(tetraploid) 35.077
CNS0095607Whole white alabastrum(tetraploid) 13.098
CNS0095608Whole white alabastrum(tetraploid) 21.308
CNS0095609Whole white alabastrum(tetraploid) 32.312
CNS0095610Silvery flower (tetraploid) 11.978
CNS0095611Silvery flower (tetraploid) 23.090
CNS0095612Silvery flower (tetraploid) 32.630
CNS0095613Golden flower (tetraploid) 10.497
CNS0095614Golden flower (tetraploid) 21.419
CNS0095615Golden flower (tetraploid) 30.602
CRA001975CRR073297Stem 14.652
CRR073298Stem 22.841
CRR073299Stem 31.941
CRR073300Leaf 12.700
CRR073301Leaf 22.228
CRR073302Leaf 31.354
CRR073303Juvenile bud 12.387
CRR073304Juvenile bud 22.015
CRR073305Juvenile bud 31.640
CRR073306Third green 10.215
CRR073307Third green 20.390
CRR073308Third green 30.355
CRR073309Second white 10.192
CRR073310Second white 20.426
CRR073311Second white 30.091
CRR073312Silver flowering 10.047
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.039
CRR073315Gold flowering 10.488
CRR073316Gold flowering 20.598
CRR073317Gold flowering 30.549
CRR073318Tawny withering 15.379
CRR073319Tawny withering 25.468
CRR073320Tawny withering 37.080