Detail information of GWHGAAZE017409


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010033868.12.4118E-145PREDICTED: ras-related protein Rab7-like [Eucalyptus grandis]
Swissprottr|O24461|RAB7_PRUAR1E-143Ras-related protein Rab7
trEMBLtr|A0A059AI28|A0A059AI28_EUCGR9E-146Uncharacterized protein {ECO:0000313|EMBL:KCW53702.1}
TAIR10AT1G52280.14E-111RAB GTPase homolog G3D

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene58849325887281-
GWHAAZE00000005mRNA58849325887281-
GWHAAZE00000005exon58849325885001-
GWHAAZE00000005exon58854905885635-
GWHAAZE00000005exon58857415885821-
GWHAAZE00000005exon58859945886140-
GWHAAZE00000005exon58868045886903-
GWHAAZE00000005exon58870105887036-
GWHAAZE00000005exon58872295887281-
GWHAAZE00000005CDS58872295887281-
GWHAAZE00000005CDS58870105887036-
GWHAAZE00000005CDS58868045886903-
GWHAAZE00000005CDS58859945886140-
GWHAAZE00000005CDS58857415885821-
GWHAAZE00000005CDS58854905885635-
GWHAAZE00000005CDS58849325885001-
Transcript Sequence

Network for GWHGAAZE017409

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras101771.00E-54
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07897RAB7A Endocytosis map04144
Phagosomemap04145
Autophagy - animalmap04140
Autophagy - yeastmap04138
Mitophagy - animalmap04137

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf64.391
SRR3591706second leaf47.910
SRR3591707mature leaf53.165
SRR3591708Shoot apex54.331
SRR3591709Stem72.617
SRR3591710White floral bud110.718
SRR3591711White flower88.137
SRR3591712Green floral bud68.482
SRR3591713Yellow flower106.851
SRP173429 SRR8316895Juvenile bud stage 31.856
SRR8316896Juvenile bud stage 45.648
SRR8316897Juvenile bud stage 18.265
SRR8316894Third green stage 17.613
SRR8316900Third green stage 56.265
SRR8316901Third green stage 60.175
SRR8316898Complete white stage 41.576
SRR8316899Complete white stage 99.014
SRR8316903Complete white stage 67.422
SRR8316902Silver flowering stage49.519
SRR8316904Silver flowering stage58.801
SRR8316905Silver flowering stage35.793
SRR8316906Gold flowering stage 107.510
SRR8316907Gold flowering stage 102.366
SRR8316908Gold flowering stage 119.396
SRP132670SRR6706286Control32.791
SRR6706287Light intensity 50%33.553
SRR6706288Light intensity 20%43.116
CNP0000432CNS0095592Slightly white alabastrum(diploid) 148.222
CNS0095593Slightly white alabastrum(diploid) 246.506
CNS0095594Slightly white alabastrum(diploid) 348.267
CNS0095595Whole white alabastrum(diploid) 243.745
CNS0095596Whole white alabastrum(diploid) 338.879
CNS0095597Whole white alabastrum(diploid) 446.499
CNS0095598Silvery flower (diploied) 164.109
CNS0095599Silvery flower (diploied) 256.499
CNS0095600Silvery flower (diploied) 368.547
CNS0095601Golden flower (diploid) 148.238
CNS0095602Golden flower (diploid) 268.051
CNS0095603Golden flower (diploid) 365.129
CNS0095604Slightly white alabastrum(tetraploid) 148.121
CNS0095605Slightly white alabastrum(tetraploid) 246.400
CNS0095606Slightly white alabastrum(tetraploid) 357.595
CNS0095607Whole white alabastrum(tetraploid) 141.536
CNS0095608Whole white alabastrum(tetraploid) 245.584
CNS0095609Whole white alabastrum(tetraploid) 350.407
CNS0095610Silvery flower (tetraploid) 188.705
CNS0095611Silvery flower (tetraploid) 286.184
CNS0095612Silvery flower (tetraploid) 398.223
CNS0095613Golden flower (tetraploid) 1113.852
CNS0095614Golden flower (tetraploid) 284.629
CNS0095615Golden flower (tetraploid) 3128.512
CRA001975CRR073297Stem 145.920
CRR073298Stem 245.724
CRR073299Stem 335.211
CRR073300Leaf 140.400
CRR073301Leaf 244.575
CRR073302Leaf 358.625
CRR073303Juvenile bud 159.241
CRR073304Juvenile bud 248.679
CRR073305Juvenile bud 341.748
CRR073306Third green 163.014
CRR073307Third green 284.154
CRR073308Third green 371.601
CRR073309Second white 153.481
CRR073310Second white 273.988
CRR073311Second white 345.400
CRR073312Silver flowering 133.165
CRR073313Silver flowering 227.869
CRR073314Silver flowering 326.272
CRR073315Gold flowering 147.452
CRR073316Gold flowering 263.575
CRR073317Gold flowering 335.184
CRR073318Tawny withering 151.779
CRR073319Tawny withering 254.321
CRR073320Tawny withering 358.852