Gene detail

Detail information of GWHGAAZE017350

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006466087.1	0	PREDICTED: NADP-specific glutamate dehydrogenase-like isoform X1 [Citrus sinensis]
Swissprot	tr\|P28998\|DHE4_CHLSO	3E-125	NADP-specific glutamate dehydrogenase (Fragment)
trEMBL	tr\|A0A067F631\|A0A067F631_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO58646.1}
TAIR10	AT1G51720.1	0	Amino acid dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4964733	4972367	+
GWHAAZE00000005	mRNA	4964733	4972367	+
GWHAAZE00000005	exon	4964733	4965294	+
GWHAAZE00000005	exon	4966094	4966223	+
GWHAAZE00000005	exon	4966338	4966539	+
GWHAAZE00000005	exon	4967981	4968067	+
GWHAAZE00000005	exon	4968161	4968220	+
GWHAAZE00000005	exon	4968317	4968403	+
GWHAAZE00000005	exon	4968616	4968687	+
GWHAAZE00000005	exon	4968892	4968991	+
GWHAAZE00000005	exon	4969083	4969160	+
GWHAAZE00000005	exon	4970146	4970236	+
GWHAAZE00000005	exon	4970324	4970481	+
GWHAAZE00000005	exon	4970559	4970650	+
GWHAAZE00000005	exon	4971334	4971408	+
GWHAAZE00000005	exon	4972124	4972197	+
GWHAAZE00000005	exon	4972292	4972367	+
GWHAAZE00000005	CDS	4964733	4965294	+
GWHAAZE00000005	CDS	4966094	4966223	+
GWHAAZE00000005	CDS	4966338	4966539	+
GWHAAZE00000005	CDS	4967981	4968067	+
GWHAAZE00000005	CDS	4968161	4968220	+
GWHAAZE00000005	CDS	4968317	4968403	+
GWHAAZE00000005	CDS	4968616	4968687	+
GWHAAZE00000005	CDS	4968892	4968991	+
GWHAAZE00000005	CDS	4969083	4969160	+
GWHAAZE00000005	CDS	4970146	4970236	+
GWHAAZE00000005	CDS	4970324	4970481	+
GWHAAZE00000005	CDS	4970559	4970650	+
GWHAAZE00000005	CDS	4971334	4971408	+
GWHAAZE00000005	CDS	4972124	4972197	+
GWHAAZE00000005	CDS	4972292	4972367	+

Transcript Sequence
>GWHTAAZE017370 ATGTTGCTTCCATTTGGTGGGTTAGGGATGAATTCTACAATGGATGATATGAACCTAATTCAGCATGCTCAGAGGCATCACTTGGTTGTTAGGGAACTTGGAGAAGAGATTGATTTGGAAATAGGGCCAGGTGATGACGATCCCTCATTTGTACACACTCCGCTTATTGGTGTTCCACCACGAGAATCTTCTGCTGAAGAACACGACGAGAGCAAGCATATGGTAATGGTATCTCAAATTCCTAGCGATGATCAAGATTTGTCAAGGACACTACCAGCAAAAAGGAAAAAGAAAGTTGTAAAAAGATGGAGAGAAGAATGGGCCGACACATACAAGTGGGCATATGTTGATGTGAAGGAAGGGACGGCTAGGATATTCTGCTCCATTTGCAGGGAGTATGGTAGAAAGCATAGGAGGAATCCTTATGGAAATGAAGGTAGTAGGAATATGCAGATGAGCGCATTAGAAGAACACAACAACAGTTTGCTTCACAAAGAGGCTCTTCGTCTCCAAATGGCCTCCAAAGATAAGATTATTGCTGATAAACCCATATTCGTAAAAGCTCTTATGTCAAAAACGGCTGGATCAATTGTGGAAGCTGTACTGAAGAGGGATCCTCATGAAGTTGAGTTCATACAGTCTGTGCAAGAAGTGGTTCACTCATTAGAAAGAGTAATTTCAAAAAATTCTAATTATGTCAACACAATGGAGCGGTTGTTAGAACCTGAGCGTATGATTGTTTTCCGCGTTCCATGGATTGATGATAGGGGTGAAACACACGTTAATCGAGGATTTCGGGTTCACTTCAACCAGACTTTGGGTCCATGTAGGGGTGGTCTCCGTTTTCATCCATCAATGAATCTGAGTGTTGCCAAGTTTCTTGGTTTTGAACAGACTTTAAAGAATGCCTTGTCTCCATACAGACTGGGAGGGGCATCAGGTGGAAGTGATTTTGATCCGAAAGGGAAAAGTGATAATGAGATCATGAGGTTTTGCCAGAGTTTTATGGATGAGCTCTATCGCTATTTGGGCCCTGACAAGGATCTTCCTTCAGAAGAAATGGGTGTTGGTACTCGTGAAATGGGTTTTCTTTATGGACAATTTCGCCGCCTGGCGGGTCATTCTCAGGGAAGTTTTACGGGACCCAGATTAAACTGGTCTGGCTCCAGCCTCCGAACTGAAGCTACCGGCTATGGACTGGTCTTCTTTGCTCAGCTTATTCTTGCAGACATGAATAAAGAACTAAAAGGACTAAGGTTCCGTAATAAACTTTACTCAATGAAACTCATCTATACTGTAGTTAGTGGTTCTGGAAAGATTGCAATGCATGTCTTAGAGAAGCTTATTGCGTACGGTGCTCTTCCCATCACAGTATCAGATTCAAAGGGATATTTGGTGGATGAGGATGGATTTGATTACATGAAAATATCTTTTCTCAGGGATATTAAAGCTCAGCAGAGAAGTTTGAGAGACTATTCAAAGACTTATGCGCGCTCGAAGTACTACGACGAAGCAAAGCCTTGGACTGAAAGGTGTGATGTGGCGTTTCCTTGTGCTTCACAAAATGAAATCGATCAGTCTGATGCCATTAATTTGGTTAATTCAGGTTGTCGTATACTTGTCGAAGGTTCAAACATGCCCTGTACCCCTGAAGCAGTTGATATTCTGAGGAAGGCTAATGTTCTGATTGCGCCTTCGATGGCTGCTGGTGCAGGAGGGGTTGTTGCTGGTGAACTCGAACTAAAAGAGTGCAATTTGAACTGGTCTCCTGAGGACTTTGAATCTAAGTTACAGGAAGCAATGAAGCAAACCTATCAGAGAGCTCTGAAAGCAGCTACGGATTTTGGTTACCAGAAAGAGAGTCCCGAGGCTTTGGTACACGGAGCACTTATATCTTCTTTTCTTACTATCGCAAATAGTATGTCGGATCAAGGGTGTGTGTAG

Network for GWHGAAZE017350

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02812.19	ELFV_dehydrog_N	242	369	1.70E-42
PF00208.22	ELFV_dehydrog	388	645	3.30E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00262	E1.4.1.4, gdhA	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Nitrogen metabolism	map00910
		Alanine, aspartate and glutamate metabolism	map00250
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	63.423
	SRR3591706	second leaf	39.036
	SRR3591707	mature leaf	48.811
	SRR3591708	Shoot apex	47.816
	SRR3591709	Stem	86.603
	SRR3591710	White floral bud	81.340
	SRR3591711	White flower	79.613
	SRR3591712	Green floral bud	59.393
	SRR3591713	Yellow flower	73.516
SRP173429	SRR8316895	Juvenile bud stage	33.049
	SRR8316896	Juvenile bud stage	39.722
	SRR8316897	Juvenile bud stage	21.112
	SRR8316894	Third green stage	19.773
	SRR8316900	Third green stage	49.729
	SRR8316901	Third green stage	47.045
	SRR8316898	Complete white stage	28.514
	SRR8316899	Complete white stage	84.765
	SRR8316903	Complete white stage	52.668
	SRR8316902	Silver flowering stage	31.993
	SRR8316904	Silver flowering stage	51.315
	SRR8316905	Silver flowering stage	26.538
	SRR8316906	Gold flowering stage	86.356
	SRR8316907	Gold flowering stage	77.916
	SRR8316908	Gold flowering stage	94.103
SRP132670	SRR6706286	Control	46.010
	SRR6706287	Light intensity 50%	49.958
	SRR6706288	Light intensity 20%	49.763
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.976
	CNS0095593	Slightly white alabastrum(diploid) 2	32.306
	CNS0095594	Slightly white alabastrum(diploid) 3	29.063
	CNS0095595	Whole white alabastrum(diploid) 2	28.540
	CNS0095596	Whole white alabastrum(diploid) 3	22.638
	CNS0095597	Whole white alabastrum(diploid) 4	25.667
	CNS0095598	Silvery flower (diploied) 1	58.741
	CNS0095599	Silvery flower (diploied) 2	49.360
	CNS0095600	Silvery flower (diploied) 3	71.562
	CNS0095601	Golden flower (diploid) 1	49.383
	CNS0095602	Golden flower (diploid) 2	69.331
	CNS0095603	Golden flower (diploid) 3	65.925
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.653
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.842
	CNS0095606	Slightly white alabastrum(tetraploid) 3	64.856
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.973
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.806
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.720
	CNS0095610	Silvery flower (tetraploid) 1	86.552
	CNS0095611	Silvery flower (tetraploid) 2	78.220
	CNS0095612	Silvery flower (tetraploid) 3	70.145
	CNS0095613	Golden flower (tetraploid) 1	49.416
	CNS0095614	Golden flower (tetraploid) 2	78.183
	CNS0095615	Golden flower (tetraploid) 3	73.394
CRA001975	CRR073297	Stem 1	49.177
	CRR073298	Stem 2	45.816
	CRR073299	Stem 3	41.838
	CRR073300	Leaf 1	55.111
	CRR073301	Leaf 2	50.926
	CRR073302	Leaf 3	35.573
	CRR073303	Juvenile bud 1	44.222
	CRR073304	Juvenile bud 2	42.027
	CRR073305	Juvenile bud 3	54.185
	CRR073306	Third green 1	23.287
	CRR073307	Third green 2	22.656
	CRR073308	Third green 3	27.703
	CRR073309	Second white 1	22.656
	CRR073310	Second white 2	31.601
	CRR073311	Second white 3	29.687
	CRR073312	Silver flowering 1	19.462
	CRR073313	Silver flowering 2	13.522
	CRR073314	Silver flowering 3	16.267
	CRR073315	Gold flowering 1	31.763
	CRR073316	Gold flowering 2	44.913
	CRR073317	Gold flowering 3	21.477
	CRR073318	Tawny withering 1	48.446
	CRR073319	Tawny withering 2	44.718
	CRR073320	Tawny withering 3	48.951