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Detail information of GWHGAAZE017330
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_010033784.1
0
PREDICTED: WD-40 repeat-containing protein MSI4-like [Eucalyptus grandis]
Swissprot
tr|O22607|MSI4_ARATH
0
WD-40 repeat-containing protein MSI4
trEMBL
tr|A0A059AJK8|A0A059AJK8_EUCGR
0
Uncharacterized protein {ECO:0000313|EMBL:KCW53595.1}
TAIR10
AT2G19520.1
0
Transducin family protein / WD-40 repeat family protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000005
gene
4526077
4536647
+
GWHAAZE00000005
mRNA
4526077
4536647
+
GWHAAZE00000005
exon
4526077
4526232
+
GWHAAZE00000005
exon
4526880
4526926
+
GWHAAZE00000005
exon
4527190
4527253
+
GWHAAZE00000005
exon
4527996
4528082
+
GWHAAZE00000005
exon
4528181
4528243
+
GWHAAZE00000005
exon
4529514
4529586
+
GWHAAZE00000005
exon
4529672
4529784
+
GWHAAZE00000005
exon
4529950
4530025
+
GWHAAZE00000005
exon
4530329
4530545
+
GWHAAZE00000005
exon
4530929
4531010
+
GWHAAZE00000005
exon
4533135
4533208
+
GWHAAZE00000005
exon
4533402
4533513
+
GWHAAZE00000005
exon
4533631
4533705
+
GWHAAZE00000005
exon
4534016
4534092
+
GWHAAZE00000005
exon
4536016
4536115
+
GWHAAZE00000005
exon
4536546
4536647
+
GWHAAZE00000005
CDS
4526077
4526232
+
GWHAAZE00000005
CDS
4526880
4526926
+
GWHAAZE00000005
CDS
4527190
4527253
+
GWHAAZE00000005
CDS
4527996
4528082
+
GWHAAZE00000005
CDS
4528181
4528243
+
GWHAAZE00000005
CDS
4529514
4529586
+
GWHAAZE00000005
CDS
4529672
4529784
+
GWHAAZE00000005
CDS
4529950
4530025
+
GWHAAZE00000005
CDS
4530329
4530545
+
GWHAAZE00000005
CDS
4530929
4531010
+
GWHAAZE00000005
CDS
4533135
4533208
+
GWHAAZE00000005
CDS
4533402
4533513
+
GWHAAZE00000005
CDS
4533631
4533705
+
GWHAAZE00000005
CDS
4534016
4534092
+
GWHAAZE00000005
CDS
4536016
4536115
+
GWHAAZE00000005
CDS
4536546
4536647
+
Transcript Sequence
>GWHTAAZE017350 CTGCAGAGAAGTGAGTGAGTGAGAGAGAAGATGAAGGAGAGAGGGGGCAAACCATCGGTGGACGAGCTTTACACACAGTGGAAATCCCTCGTCCCCGTCCTCTACGACTGGCTCGCTAATCACAATCTCGTTTGGCCATCTCTCTCTTGCCGGTCCGATTATGCTGACTCATTAGTGTCCATCGCTATCTCTGTTGTTAACATATGGGGGCCTCAACTAGAGCAAGCAACTTACAAGAGTCGTCAGCGTCTTTACCTTTCCGAACAGACTGATGGCAGTGTTCCAAATACGCTTGTAATAGCAAACTGTGAAATTGTAAAACCTAGGGTTGCTGCAGCTGAACACATATCACAGTTCAATGAAGAAGCGCGTTCTCCATTTGTAAAGAAGTTTAAAACCATTATACATCCTGGAGAGGTGAATCGAATCAGGGAACTTCCGCAGAATAGCAAGATAGTGGCTACACACACCGACAGTCCTGATGTATGCAAAAGCCATATGTGCCCTAAAGTTCAAGAAATGTTTCAGGTTTTAATTTGGGATGTTGAAACTCAGCCTAATCGTCATGCTGTCTTGGGAGCATCAGAATCCCGTCCTGATTTGATATTGACTGGACATGAAGATAATGCGGAATTCGCTCTTGCAATGTGCCCGATTGAACCCTTTGTGCTCTCTGGAGGGAAGGACAAGTCCGTAGTCTTGTGGAGTATTCATGATCATATCTCTAGTTTGGCCACAGAGCCAGGGGCCACAAAGTCTCCGGGATCTGGTGCGGCCAAGACCCCCAAGGGTAGTGGGAGTGATGAAAAACCTCTGGACGGTCCTTCCATTCAAGCACGAGGTATTTTCAAAGGGCACGGGGATACTGTTGAAGACGTGCAGTTCTGCCCCTCAAGTGCCCAAGAGTTCTGCAGTGTTGGGGATGATTCTTGCCTTATTCTGTGGGATGCAAGAACTGGCTCTACTCCAGCCATCAAGGTTGAGAAAGCTCACAATGCCGATCTTCACTGTGTTGATTGGAATCCCCATGACACAAACTTCATACTAACTGGGTCAGCCGATAATTCGGTTCGAATGTTTGACCGCCGGAACCTCACTTCTGGGGGAGTTGGATCCCCGGTCCACATATTTGAGGGTCACAGTGCTGCTGTCCTTTGTGTTCAGTGGTCTCCAGACAAGTCCTCCGTCTTTGGAAGCTCTGCAGAGGATGGCATCTTGAACATCTGGGATTATGAAAAGATTAGTAAAAAGCAAGACCTTGCTGGAAAATCTCCTGATTCACCCCCAGGTCTATTCTTCCGACATTCTGGGCACAGGGATAAGGTGGTTGACTTCCACTGGAATACATCTGATCCGTGGACAATAGTTAGCGTGTCTGATGATTGTGAAAGTACTAGCGGGGGTGGTACACTACAGTTATGGAGGATGATAGATCTGATATATAGGCCAGAAGAGGATGTTCTGGATGAGCTGGAGAAAATGGGTTCTCACATACTTGAGTGTGGCCCTTCCCCTTGA
Network for GWHGAAZE017330
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF12265.9
CAF1C_H4-bd
23
104
2.00E-13
PF00400.33
WD40
201
235
0.098
PF00400.33
WD40
280
315
0.017
PF00400.33
WD40
328
360
0.0035
PF00400.33
WD40
370
409
5.70E-07
Protein Sequence
>GWHPAAZE017340 LQRSEVREKMKERGGKPSVDELYTQWKSLVPVLYDWLANHNLVWPSLSCRSDYADSLVSIAISVVNIWGPQLEQATYKSRQRLYLSEQTDGSVPNTLVIANCEIVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVCKSHMCPKVQEMFQVLIWDVETQPNRHAVLGASESRPDLILTGHEDNAEFALAMCPIEPFVLSGGKDKSVVLWSIHDHISSLATEPGATKSPGSGAAKTPKGSGSDEKPLDGPSIQARGIFKGHGDTVEDVQFCPSSAQEFCSVGDDSCLILWDARTGSTPAIKVEKAHNADLHCVDWNPHDTNFILTGSADNSVRMFDRRNLTSGGVGSPVHIFEGHSAAVLCVQWSPDKSSVFGSSAEDGILNIWDYEKISKKQDLAGKSPDSPPGLFFRHSGHRDKVVDFHWNTSDPWTIVSVSDDCESTSGGGTLQLWRMIDLIYRPEEDVLDELEKMGSHILECGPSP
Gene family
Gene family
subfamily
Ubiquitin Family
DWD
KEGG pathway
KO
Enzyme
pathway
mapID
K10752
RBBP4, HAT2, CAF1, MIS16
Cellular senescence
map04218
Gene Ontology
GO term
Ontology
Name
GO:0005515
molecular_function
protein binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
25.632
SRR3591706
second leaf
16.774
SRR3591707
mature leaf
8.434
SRR3591708
Shoot apex
61.631
SRR3591709
Stem
10.845
SRR3591710
White floral bud
10.440
SRR3591711
White flower
11.855
SRR3591712
Green floral bud
13.706
SRR3591713
Yellow flower
3.724
SRP173429
SRR8316895
Juvenile bud stage
17.134
SRR8316896
Juvenile bud stage
18.787
SRR8316897
Juvenile bud stage
7.495
SRR8316894
Third green stage
6.333
SRR8316900
Third green stage
17.776
SRR8316901
Third green stage
16.002
SRR8316898
Complete white stage
3.783
SRR8316899
Complete white stage
22.706
SRR8316903
Complete white stage
5.508
SRR8316902
Silver flowering stage
2.531
SRR8316904
Silver flowering stage
2.170
SRR8316905
Silver flowering stage
1.246
SRR8316906
Gold flowering stage
3.717
SRR8316907
Gold flowering stage
4.182
SRR8316908
Gold flowering stage
3.224
SRP132670
SRR6706286
Control
12.822
SRR6706287
Light intensity 50%
14.213
SRR6706288
Light intensity 20%
16.415
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
9.930
CNS0095593
Slightly white alabastrum(diploid) 2
12.711
CNS0095594
Slightly white alabastrum(diploid) 3
7.719
CNS0095595
Whole white alabastrum(diploid) 2
9.110
CNS0095596
Whole white alabastrum(diploid) 3
7.187
CNS0095597
Whole white alabastrum(diploid) 4
7.911
CNS0095598
Silvery flower (diploied) 1
12.281
CNS0095599
Silvery flower (diploied) 2
14.177
CNS0095600
Silvery flower (diploied) 3
9.900
CNS0095601
Golden flower (diploid) 1
10.745
CNS0095602
Golden flower (diploid) 2
9.645
CNS0095603
Golden flower (diploid) 3
9.007
CNS0095604
Slightly white alabastrum(tetraploid) 1
12.633
CNS0095605
Slightly white alabastrum(tetraploid) 2
9.258
CNS0095606
Slightly white alabastrum(tetraploid) 3
20.256
CNS0095607
Whole white alabastrum(tetraploid) 1
6.594
CNS0095608
Whole white alabastrum(tetraploid) 2
6.846
CNS0095609
Whole white alabastrum(tetraploid) 3
10.392
CNS0095610
Silvery flower (tetraploid) 1
6.634
CNS0095611
Silvery flower (tetraploid) 2
7.889
CNS0095612
Silvery flower (tetraploid) 3
4.117
CNS0095613
Golden flower (tetraploid) 1
2.398
CNS0095614
Golden flower (tetraploid) 2
3.987
CNS0095615
Golden flower (tetraploid) 3
1.716
CRA001975
CRR073297
Stem 1
26.276
CRR073298
Stem 2
22.943
CRR073299
Stem 3
30.509
CRR073300
Leaf 1
21.079
CRR073301
Leaf 2
20.317
CRR073302
Leaf 3
21.242
CRR073303
Juvenile bud 1
17.440
CRR073304
Juvenile bud 2
12.881
CRR073305
Juvenile bud 3
18.047
CRR073306
Third green 1
1.383
CRR073307
Third green 2
2.625
CRR073308
Third green 3
1.410
CRR073309
Second white 1
2.034
CRR073310
Second white 2
1.746
CRR073311
Second white 3
2.005
CRR073312
Silver flowering 1
0.981
CRR073313
Silver flowering 2
1.213
CRR073314
Silver flowering 3
2.940
CRR073315
Gold flowering 1
16.065
CRR073316
Gold flowering 2
21.660
CRR073317
Gold flowering 3
18.151
CRR073318
Tawny withering 1
22.964
CRR073319
Tawny withering 2
16.707
CRR073320
Tawny withering 3
18.306