Gene detail

Detail information of GWHGAAZE017237

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011072679.1	3.8452E-156	PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Sesamum indicum]
Swissprot	tr\|Q9SSA8\|RA212_ARATH	1E-69	Ethylene-responsive transcription factor RAP2-12
trEMBL	tr\|V5NXG8\|V5NXG8_COFAR	2E-153	Ethylene response factor 5 {ECO:0000313\|EMBL:AHA93905.1}
TAIR10	AT1G53910.3	2E-54	related to AP2 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3071097	3074119	+
GWHAAZE00000005	mRNA	3071097	3074119	+
GWHAAZE00000005	exon	3071097	3071387	+
GWHAAZE00000005	exon	3073227	3074119	+
GWHAAZE00000005	five_prime_UTR	3071097	3071134	+
GWHAAZE00000005	CDS	3071135	3071387	+
GWHAAZE00000005	CDS	3073227	3074119	+

Transcript Sequence
>GWHTAAZE017257 TCCTAACACCTTTTTTCAGTAAAATACGATAGAGAAAGATGTGCGGTGGTGCCATCATCTCCGACTTAATTCCGCCGAGCCGCACTCGCCGGGTCACTGATGACCTTCTCCGGAGAACCGCTCCCAAGAAAAACCCTAGCAATTACTACTCCAAGCCCTTGCGATCTGAGATCTTCGATCTAGTACTCGAAGATGATTTTGAAGCCCATTTTCAGGGTTTCAACGACTTATCTGATGTTGACGTCAAGCCTTTCGCTTTCTCTTCTTCCAAACACTCCACGCTTTCTCGCGGCTCTAAATCTAAATCAGAAGATTATGTTGAGCAAGCAAAAAAATCGTCAAAGAGGAAGCAGAAAAATCAGTACCGAGGGATCAGGCAACGTCCATGGGGGAAGTGGGCTGCAGAAATCCGTGACCCAAGGAAAGGGGTGCGAGTTTGGCTTGGAACTTTTAACACTGCTGAAGAGGCTGCAAGAGCTTATGATCTGGAGGCACGGAGGATCAGGGGGAAAAAAGCAAAAGTGAATTTTCCTGATGAATTTCCTCAAGCTGATTCGAATCTCACTGTTAAGACAAACCCTCTAAACGTACCATCCAAGCAAAACCCAATCTCTGCGCAATCCAGTCTGAACCAAAATTTCAATTTTGAGAACAAACCCGATTTTGACTATTACAGTTCTTTAGGTTTTACGGAAGAGAAACAACCAATTAAGCATTATGGCCATGTGGATGTTTACCCAGTTACTGGAGAGATGGGGATGAAAACATTTTCCCCATCAGACAGTGCTCCCATGTACTTCAATTCTGACCAAGGAAGTAACTCTTTCGATTGTTCTGACTTTGGTTGGGGAGAGCCTTACTCAAAGACTCCTGAAATAACCTCTGTTCTTTCGGCTGCTGTTGAAATTGATGAAGCTCAATTTGCTGAAGATGTAAACCCTTCAAAGAAACTGAAAACTAATTCAGTGGACTTGGTGTCAGGTGAAGAAAATACTGTAAAGGTGTCTGATGAGTTTACTGATTTTGAGTCGCAAATGATGTTCTTTCAGATCCCATATCTCGATGGAGACTGGGATGCCTCGGTTGATACTCTCCTTGGTGGGAACGCAACTCAGGATGGTGGAAACTCTATGGATCTCTGGGCATTTGATAACCTTGCTGCTATAATGGGAGGATCTTACTGA

Network for GWHGAAZE017237

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	108	157	1.40E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	65.843
	SRR3591706	second leaf	38.110
	SRR3591707	mature leaf	39.719
	SRR3591708	Shoot apex	41.937
	SRR3591709	Stem	107.878
	SRR3591710	White floral bud	74.498
	SRR3591711	White flower	95.202
	SRR3591712	Green floral bud	64.018
	SRR3591713	Yellow flower	79.431
SRP173429	SRR8316895	Juvenile bud stage	53.692
	SRR8316896	Juvenile bud stage	58.813
	SRR8316897	Juvenile bud stage	40.737
	SRR8316894	Third green stage	25.535
	SRR8316900	Third green stage	66.803
	SRR8316901	Third green stage	64.512
	SRR8316898	Complete white stage	26.404
	SRR8316899	Complete white stage	94.707
	SRR8316903	Complete white stage	47.660
	SRR8316902	Silver flowering stage	23.616
	SRR8316904	Silver flowering stage	34.421
	SRR8316905	Silver flowering stage	16.161
	SRR8316906	Gold flowering stage	57.927
	SRR8316907	Gold flowering stage	59.794
	SRR8316908	Gold flowering stage	84.791
SRP132670	SRR6706286	Control	67.313
	SRR6706287	Light intensity 50%	67.493
	SRR6706288	Light intensity 20%	64.606
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	59.822
	CNS0095593	Slightly white alabastrum(diploid) 2	60.139
	CNS0095594	Slightly white alabastrum(diploid) 3	52.352
	CNS0095595	Whole white alabastrum(diploid) 2	48.571
	CNS0095596	Whole white alabastrum(diploid) 3	35.753
	CNS0095597	Whole white alabastrum(diploid) 4	40.939
	CNS0095598	Silvery flower (diploied) 1	82.639
	CNS0095599	Silvery flower (diploied) 2	73.108
	CNS0095600	Silvery flower (diploied) 3	67.423
	CNS0095601	Golden flower (diploid) 1	70.097
	CNS0095602	Golden flower (diploid) 2	84.167
	CNS0095603	Golden flower (diploid) 3	81.100
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.462
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.421
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.811
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.864
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.928
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.312
	CNS0095610	Silvery flower (tetraploid) 1	42.884
	CNS0095611	Silvery flower (tetraploid) 2	40.805
	CNS0095612	Silvery flower (tetraploid) 3	40.189
	CNS0095613	Golden flower (tetraploid) 1	31.466
	CNS0095614	Golden flower (tetraploid) 2	44.108
	CNS0095615	Golden flower (tetraploid) 3	34.847
CRA001975	CRR073297	Stem 1	45.510
	CRR073298	Stem 2	42.273
	CRR073299	Stem 3	55.134
	CRR073300	Leaf 1	55.271
	CRR073301	Leaf 2	53.899
	CRR073302	Leaf 3	62.035
	CRR073303	Juvenile bud 1	63.770
	CRR073304	Juvenile bud 2	69.108
	CRR073305	Juvenile bud 3	88.133
	CRR073306	Third green 1	62.286
	CRR073307	Third green 2	48.973
	CRR073308	Third green 3	60.490
	CRR073309	Second white 1	58.008
	CRR073310	Second white 2	44.454
	CRR073311	Second white 3	36.512
	CRR073312	Silver flowering 1	48.301
	CRR073313	Silver flowering 2	45.717
	CRR073314	Silver flowering 3	51.750
	CRR073315	Gold flowering 1	26.218
	CRR073316	Gold flowering 2	28.919
	CRR073317	Gold flowering 3	25.933
	CRR073318	Tawny withering 1	49.278
	CRR073319	Tawny withering 2	55.202
	CRR073320	Tawny withering 3	57.672