Detail information of GWHGAAZE017234


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010654371.10PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Vitis vinifera]
Swissprottr|Q9LUM0|FAB1B_ARATH01-phosphatidylinositol-3-phosphate 5-kinase FAB1B
trEMBLtr|M5WQM8|M5WQM8_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ16097.1}
TAIR10AT3G14270.10phosphatidylinositol-4-phosphate 5-kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene29981603010864-
GWHAAZE00000005mRNA29981603010864-
GWHAAZE00000005exon29981602998486-
GWHAAZE00000005exon29985822998848-
GWHAAZE00000005exon29998013001297-
GWHAAZE00000005exon30046023004772-
GWHAAZE00000005exon30048633004986-
GWHAAZE00000005exon30054193005750-
GWHAAZE00000005exon30058593006731-
GWHAAZE00000005exon30068783007222-
GWHAAZE00000005exon30073653007518-
GWHAAZE00000005exon30085753009309-
GWHAAZE00000005exon30100683010708-
GWHAAZE00000005exon30107993010864-
GWHAAZE00000005five_prime_UTR30107993010864-
GWHAAZE00000005five_prime_UTR30106553010708-
GWHAAZE00000005CDS30100683010654-
GWHAAZE00000005CDS30085753009309-
GWHAAZE00000005CDS30073653007518-
GWHAAZE00000005CDS30068783007222-
GWHAAZE00000005CDS30058593006731-
GWHAAZE00000005CDS30054193005750-
GWHAAZE00000005CDS30048633004986-
GWHAAZE00000005CDS30046023004772-
GWHAAZE00000005CDS29998013001297-
GWHAAZE00000005CDS29985822998848-
GWHAAZE00000005CDS29981602998486-
Transcript Sequence

Network for GWHGAAZE017234

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01363.22FYVE331018.20E-17
PF00118.25Cpn60_TCP13966402.60E-33
PF01504.19PIP5K154617122.10E-33
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K00921PIKFYVE, FAB1 Metabolic pathways map01100
Inositol phosphate metabolismmap00562
Phosphatidylinositol signaling systemmap04070
Phagosomemap04145
Regulation of actin cytoskeletonmap04810

Gene Ontology

GO term OntologyName
GO:0046488biological_processphosphatidylinositol metabolic process
GO:0046872molecular_functionmetal ion binding
GO:0016307molecular_functionphosphatidylinositol phosphate kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.104
SRR3591706second leaf8.431
SRR3591707mature leaf9.827
SRR3591708Shoot apex8.099
SRR3591709Stem13.102
SRR3591710White floral bud13.084
SRR3591711White flower12.408
SRR3591712Green floral bud12.252
SRR3591713Yellow flower11.351
SRP173429 SRR8316895Juvenile bud stage 8.598
SRR8316896Juvenile bud stage 12.877
SRR8316897Juvenile bud stage 8.336
SRR8316894Third green stage 5.410
SRR8316900Third green stage 13.949
SRR8316901Third green stage 14.158
SRR8316898Complete white stage 3.511
SRR8316899Complete white stage 9.377
SRR8316903Complete white stage 8.538
SRR8316902Silver flowering stage4.749
SRR8316904Silver flowering stage6.543
SRR8316905Silver flowering stage3.451
SRR8316906Gold flowering stage 10.818
SRR8316907Gold flowering stage 10.507
SRR8316908Gold flowering stage 11.938
SRP132670SRR6706286Control9.765
SRR6706287Light intensity 50%11.524
SRR6706288Light intensity 20%10.936
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.623
CNS0095593Slightly white alabastrum(diploid) 28.176
CNS0095594Slightly white alabastrum(diploid) 37.840
CNS0095595Whole white alabastrum(diploid) 210.511
CNS0095596Whole white alabastrum(diploid) 39.700
CNS0095597Whole white alabastrum(diploid) 49.309
CNS0095598Silvery flower (diploied) 16.063
CNS0095599Silvery flower (diploied) 27.071
CNS0095600Silvery flower (diploied) 314.403
CNS0095601Golden flower (diploid) 17.414
CNS0095602Golden flower (diploid) 217.045
CNS0095603Golden flower (diploid) 315.909
CNS0095604Slightly white alabastrum(tetraploid) 111.409
CNS0095605Slightly white alabastrum(tetraploid) 210.037
CNS0095606Slightly white alabastrum(tetraploid) 37.619
CNS0095607Whole white alabastrum(tetraploid) 111.063
CNS0095608Whole white alabastrum(tetraploid) 210.000
CNS0095609Whole white alabastrum(tetraploid) 311.588
CNS0095610Silvery flower (tetraploid) 19.442
CNS0095611Silvery flower (tetraploid) 28.946
CNS0095612Silvery flower (tetraploid) 312.080
CNS0095613Golden flower (tetraploid) 15.068
CNS0095614Golden flower (tetraploid) 28.488
CNS0095615Golden flower (tetraploid) 314.983
CRA001975CRR073297Stem 113.274
CRR073298Stem 211.911
CRR073299Stem 37.766
CRR073300Leaf 114.795
CRR073301Leaf 211.741
CRR073302Leaf 38.744
CRR073303Juvenile bud 110.079
CRR073304Juvenile bud 27.986
CRR073305Juvenile bud 310.722
CRR073306Third green 114.506
CRR073307Third green 29.811
CRR073308Third green 313.091
CRR073309Second white 15.400
CRR073310Second white 27.057
CRR073311Second white 37.395
CRR073312Silver flowering 110.623
CRR073313Silver flowering 28.923
CRR073314Silver flowering 36.827
CRR073315Gold flowering 16.543
CRR073316Gold flowering 29.932
CRR073317Gold flowering 35.692
CRR073318Tawny withering 110.115
CRR073319Tawny withering 212.875
CRR073320Tawny withering 310.328