Gene detail

Detail information of GWHGAAZE017231

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006465804.1	PREDICTED: alanine aminotransferase 2, mitochondrial-like [Citrus sinensis]
Swissprot	tr\|Q9LDV4\|ALAT2_ARATH	Alanine aminotransferase 2, mitochondrial (Precursor)
trEMBL	tr\|V4RYE3\|V4RYE3_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR40038.1}
TAIR10	AT1G72330.1	alanine aminotransferase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	2937549	2941751	+
GWHAAZE00000005	mRNA	2937549	2941751	+
GWHAAZE00000005	exon	2937549	2937576	+
GWHAAZE00000005	exon	2937775	2937848	+
GWHAAZE00000005	exon	2938286	2938351	+
GWHAAZE00000005	exon	2938423	2938484	+
GWHAAZE00000005	exon	2938887	2938965	+
GWHAAZE00000005	exon	2939067	2939171	+
GWHAAZE00000005	exon	2939259	2939369	+
GWHAAZE00000005	exon	2939458	2939508	+
GWHAAZE00000005	exon	2939697	2939771	+
GWHAAZE00000005	exon	2939952	2940072	+
GWHAAZE00000005	exon	2940155	2940314	+
GWHAAZE00000005	exon	2940388	2940463	+
GWHAAZE00000005	exon	2940828	2941031	+
GWHAAZE00000005	exon	2941334	2941751	+
GWHAAZE00000005	CDS	2937549	2937576	+
GWHAAZE00000005	CDS	2937775	2937848	+
GWHAAZE00000005	CDS	2938286	2938351	+
GWHAAZE00000005	CDS	2938423	2938484	+
GWHAAZE00000005	CDS	2938887	2938965	+
GWHAAZE00000005	CDS	2939067	2939171	+
GWHAAZE00000005	CDS	2939259	2939369	+
GWHAAZE00000005	CDS	2939458	2939508	+
GWHAAZE00000005	CDS	2939697	2939771	+
GWHAAZE00000005	CDS	2939952	2940072	+
GWHAAZE00000005	CDS	2940155	2940314	+
GWHAAZE00000005	CDS	2940388	2940463	+
GWHAAZE00000005	CDS	2940828	2941031	+
GWHAAZE00000005	CDS	2941334	2941450	+
GWHAAZE00000005	three_prime_UTR	2941451	2941751	+

Transcript Sequence
>GWHTAAZE017251 GTCTTGAAATGTGAGTATGCTGTCCGTGGATATTATTTTCTGTTGTCGCAGCAATTACAACAAGAATTACTAGATAAGCCAGGTTCTCATACTTTCGACGAGATACTTTACTGCAATATTGGCAATCCCCAATCTCTCAATCAGCAACCAATTACTTTCTTCAGAGAGGTTCTTGCGTTATGTGACCATCCTGCCATTTTGGACAAAAGTGAGACTCAGGGTTTGTTCAGTGCGGATGCCATAGAGCGGGCTTGGCAGATCCTGGATCAAATTCCTGGAAGAGCAACTGGTGCATATAGTCATAGTCAGGGTATCAAGGGATTACGTGATACTATTGCTGCTGGTATTGAAGTTCGTGATGGTTTTCCTTGTGATCCAAATGATATTTTCTTAACAGACGGTGCAAGCCCAGCTGTTCATATGATGATGCAATTGCTGATAAGGTCAGAGAAGGATGGAATCCTTTGTCCTATTCCCCAGTACCCTCTGTACTCTGCTTCAATCGCCCTCCATGGTGGCACCCTTGTTCCTTATTATCTAGATGAAGCAACAGGATGGGGATTGGAGATCTCTGAGGTTCTTGCCGAGGAGAATCAACGAGATATTGTGGAATTCTGCAAGAAAGAAGGTCTGGTTCTTCTGGCAGATGAGGTATACCAGGAGAATGTTTATGTGCCTGAGAAGAAGTTTCACTCATTCAAGAAAATCTCCCGGTCAATGGGATATGGTGAGAAGGATATCTCCTTGGTATCCTTTCAGTCAGTCTCTAAAGGGTATTATGGGGAGTGTGGAAAAAGAGGAGGTTACATGGAGGTCACCGGTTTTACTCCTGAGATAAGGGAACAAATCTACAAAGTGGCCTCTGTAAATCTTTGTTCTAATATTTCTGGTCAAATTCTGGCGAGCCTTGTAATGAACCCTCCCAAGGTTCTGTTGGAGACGAATCGTTATGAATCCTATTCTGCAGAGAAGGATGGAATTCTCTCATCCCTAGCAAGGCGTGCAAAGACACTTGAAGATGCACTCAACAGTTTAGAGGGTATAACATGCAACAAGGCAGAAGGAGCAATGTATCTTTTTCCTCGTCTTCACCTTCCCCAGAAAGCAATAAAAGCAGCTGAAGTAGCAAAAACAGCTCCAGATGCGTTCTATGCTCGCCGCCTCCTTGCTTCGACTGGGATCGTCGTTGTTCCTGGATCTGGCTTTCGACAGGTTCCGGGAACATGGCATTTTAGGTGCACTATACTGCCTCCAGAGGATAAAATTCCGGCTGTAGTCTCTCGTTTGACAGAATTCCACAAACAATTCATGGATGAATTCCGCGACTGAGGATTTACATTCTGTCTGGATCAGACCCTCTGTTGTCTCTACAGAGTAATAAAAGTTGTAGGCCCCTGCTTAGAGAGACGAAATTTTATGTTTTTTGTTCATGCAGGTGGGTTTGTTCTTTTTCAACCGGCACGGGTTTATAAATTTGATAAAGCTGCATGAATTATATAATTTAAAGATTTGATGAATGAGATGCATGAACGAACGTTTGTTTAAGCAATTGATAAATTACAAGTGAGGGACATTTTGTTATATTAATTATGTTTTTTGAATAAATCCACTCTATATGTTATATGTCCAA

Network for GWHGAAZE017231

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	94	194	6.90E-06
PF00155.22	Aminotran_1_2	195	418	6.50E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00814	GPT, ALT	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Carbon fixation in photosynthetic organisms	map00710
		Alanine, aspartate and glutamate metabolism	map00250
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	77.628
	SRR3591706	second leaf	75.374
	SRR3591707	mature leaf	74.171
	SRR3591708	Shoot apex	50.497
	SRR3591709	Stem	91.980
	SRR3591710	White floral bud	60.396
	SRR3591711	White flower	97.985
	SRR3591712	Green floral bud	72.989
	SRR3591713	Yellow flower	94.996
SRP173429	SRR8316895	Juvenile bud stage	94.203
	SRR8316896	Juvenile bud stage	130.944
	SRR8316897	Juvenile bud stage	84.739
	SRR8316894	Third green stage	59.433
	SRR8316900	Third green stage	210.002
	SRR8316901	Third green stage	185.919
	SRR8316898	Complete white stage	84.420
	SRR8316899	Complete white stage	155.456
	SRR8316903	Complete white stage	127.048
	SRR8316902	Silver flowering stage	129.107
	SRR8316904	Silver flowering stage	160.071
	SRR8316905	Silver flowering stage	82.710
	SRR8316906	Gold flowering stage	206.375
	SRR8316907	Gold flowering stage	244.569
	SRR8316908	Gold flowering stage	239.095
SRP132670	SRR6706286	Control	120.821
	SRR6706287	Light intensity 50%	119.639
	SRR6706288	Light intensity 20%	122.079
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	106.199
	CNS0095593	Slightly white alabastrum(diploid) 2	131.368
	CNS0095594	Slightly white alabastrum(diploid) 3	111.408
	CNS0095595	Whole white alabastrum(diploid) 2	113.262
	CNS0095596	Whole white alabastrum(diploid) 3	132.189
	CNS0095597	Whole white alabastrum(diploid) 4	100.114
	CNS0095598	Silvery flower (diploied) 1	91.507
	CNS0095599	Silvery flower (diploied) 2	97.486
	CNS0095600	Silvery flower (diploied) 3	169.825
	CNS0095601	Golden flower (diploid) 1	92.493
	CNS0095602	Golden flower (diploid) 2	144.987
	CNS0095603	Golden flower (diploid) 3	136.610
	CNS0095604	Slightly white alabastrum(tetraploid) 1	91.948
	CNS0095605	Slightly white alabastrum(tetraploid) 2	81.998
	CNS0095606	Slightly white alabastrum(tetraploid) 3	87.706
	CNS0095607	Whole white alabastrum(tetraploid) 1	75.456
	CNS0095608	Whole white alabastrum(tetraploid) 2	71.406
	CNS0095609	Whole white alabastrum(tetraploid) 3	114.405
	CNS0095610	Silvery flower (tetraploid) 1	152.211
	CNS0095611	Silvery flower (tetraploid) 2	146.928
	CNS0095612	Silvery flower (tetraploid) 3	120.087
	CNS0095613	Golden flower (tetraploid) 1	115.997
	CNS0095614	Golden flower (tetraploid) 2	135.311
	CNS0095615	Golden flower (tetraploid) 3	102.387
CRA001975	CRR073297	Stem 1	95.734
	CRR073298	Stem 2	90.643
	CRR073299	Stem 3	95.948
	CRR073300	Leaf 1	107.646
	CRR073301	Leaf 2	120.403
	CRR073302	Leaf 3	125.185
	CRR073303	Juvenile bud 1	145.897
	CRR073304	Juvenile bud 2	115.400
	CRR073305	Juvenile bud 3	156.657
	CRR073306	Third green 1	134.809
	CRR073307	Third green 2	117.470
	CRR073308	Third green 3	112.758
	CRR073309	Second white 1	148.538
	CRR073310	Second white 2	75.441
	CRR073311	Second white 3	68.360
	CRR073312	Silver flowering 1	92.069
	CRR073313	Silver flowering 2	109.377
	CRR073314	Silver flowering 3	93.922
	CRR073315	Gold flowering 1	26.067
	CRR073316	Gold flowering 2	38.834
	CRR073317	Gold flowering 3	24.027
	CRR073318	Tawny withering 1	75.499
	CRR073319	Tawny withering 2	77.090
	CRR073320	Tawny withering 3	78.753