Gene detail

Detail information of GWHGAAZE017212

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011072724.1	PREDICTED: receptor-like protein kinase isoform X1 [Sesamum indicum]
Swissprot	tr\|P93194\|RPK1_IPONI	Receptor-like protein kinase (Precursor)
trEMBL	tr\|F6HBZ7\|F6HBZ7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49730.1}
TAIR10	AT1G73080.1	PEP1 receptor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	2542900	2546039	-
GWHAAZE00000005	mRNA	2542900	2546039	-
GWHAAZE00000005	exon	2542900	2543190	-
GWHAAZE00000005	exon	2543528	2543582	-
GWHAAZE00000005	exon	2543693	2544044	-
GWHAAZE00000005	exon	2544131	2546039	-
GWHAAZE00000005	CDS	2544131	2546039	-
GWHAAZE00000005	CDS	2543693	2544044	-
GWHAAZE00000005	CDS	2543528	2543582	-
GWHAAZE00000005	CDS	2542900	2543190	-

Transcript Sequence
>GWHTAAZE017232 ATGCTTCGTCAGTTGCAGTCCCTCTTTCTGTTCACAAACCGTTTGATGGGTGAGATTCCGATTAGCATTTGGAAGATTAAAAGCCTCGAGAATCTCCTGGTGTATAATAACAATCTTCACGGGGAACTACCTCTTGAGATCATTGAGCTAAAGCAATTAAGAAACATTTCTTTGTTCAACAATCGGTTTTCTGGCGTCATACCTCAAGGACTCGGAATCAATAGTAGTTTGGTGCAAGTGGACTTCACTAACAATGGGTTCACGGGTCAAATCCCCCCAAGTCTATGCTTTGGAAAGAATTTGCGGAGGTTGATTTTGGGTTCAAATCATTTTGAAGGTAGCATTCCGTCTGATATTGGAAGCTGTTCTACCCTCAATAGACTGATCTTTAGGCAGAATAAGCTCACTGGGGCTCTTCCAGAGTTTGCTAAAAATCCAAACCTTTTATATATGGACCTTAGTGACAATAATTTGAGCGGAGAGATTCCAGCTAGCTTGAGTAACCTTACTAATATTACCTCAATCAACCTATCGGCTAATAGATTTTCAGGTCTTATACCCCTGGAGCTAGGCCACCTCATGGACCTTCAGGCTCTGGATGTTTCTCACAACAATTTGGAAGGTCCTTTGCCACCTCAACTGTCAAACTGCAATAAATTGTTGCAATTTGATGCGAGTTATAATATGTTGAATGGCTCAATCCCGTCCAGTTTAAGAAGCCTGATGAGGTTGTCTAGTCTGGTTTTGAGTGCTAATCATTTTACTGGGGGGATTCCACATTTCTTGTTTGAATTCACTACGCTGTTGAATCTTCAGCTTGGTGAAAATTTATTTGGCGGAAATATCCCCTCATCAATCGGAGCAACTGGAACAGTGCAGAACCTGAAAGCATTGAATCTCAGCAATAATGAGTTGACAGGTCATCTTCCAGTAGAGCTAGGAAAATTGACTATGCTGGAGGATTTGGATATATCTCACAACAAAGTGACTGGGACATTAGCTGCTTTTGGTGACATGGATTCGTTAATTGACATCAATGTTTCGTACAATATCTTTTGGGGTCCAATACCAGTAACATTGATGAAGTTCTTGAACTCATCTACTTCATTCCTGGGCAATTCTGGCCTTTGTATCAATTGTCTTCCGAAAGGTGGCTCAAGTTGTATCAAAGGCACAAATTTTAAATCTTGTGACCTGAAATCGGGCAATCGAAAAGGGCTTGGCAAAGCAGAAATTGCTACGGCTGCTCTGGGATCATCATTATTTGTTGTTTTTCTTTTCCTTGGACTGTGTTGTTTGCTTCTCCGTCGTGAAAGACCAGAAAGATACGGTATGTTTGCCGAAGAGGGTGCTTCCACTCTACTCAACAAAGTAATGGAAGCTACTGAGATTCTGAATGACAAGTATATCATCGGGAGAGGAGCCCATGGAACTGTTTATAAGGCTTCATTGGGTCCAAACGAGGTGTATGCTGTGAAGAAGCTTGTATTTATGGGGCACAAAGGAGTACACACAAGTATGGTTAGAGAAATCCAGACAATTGGGAAAGTCAAGCACCGTAATCTAGTAAAACTGGAAGATTTTTGGTTGAGAAATGGATATGGCTTGATATTGTACAGTTACATGCCAAACGGAAGCCTTCATGATGTTCTCCATCAGATAAATCCGCCACCAAATTTAGAGTGGAATGTTCGATACAAGATAGCTCTTGGAACTGCCCAAGGTTTAGCGTATCTCCATTTTGACTGCAATCCCAGTATTGTGCATCGAGATATCAAACCGATGAACATTCTTTTGGACTCTGACATGGAGCCACATATCTCTGATTTCGGCATTGCCAAGCTTCTTGATCAGTCTTCTTCAGTACCAACCGGCATTGTTCAGGGCACAATTGGATATATTGCTCCAGAAAATGCATTTGCGATAGCAAACAGCGAGTCAGATGTTTACAGTTACGGAGTTGTTTTGCTAGAACTGATAACTAGAAAGGAGGCTTTGGACTGTTCATTTGCGGAGGGAGTGGACATAGTTGGGTGGGTTCGGTCTGTGTGGAACAAAACAGAGGAAATAGAGACAATAGTGGATCCGAGCCTTTTGGATGAATTTTATGATACGAGTGTGATGGAACAAGTGATGAATGTGCTTTTGGTGGCTTTGAGATGTACAGAGGAGGTGGCAAGCAAAAGACCCTCGATGAGGGATATAGTGAGGCGACTAGAAGATGCAAAGGGGCCGACTTCTAAAAGGAGATATATATATAGGCAGGTTCTCTCTTATTTCACCATCTGGAGAGATGGGGTTTCTAAAAAATTAATGGAGGTGGGGAAGCATGACTTGGAAGATCTAGCCGAGATAGAGAGTACCGGAAGTTTTGATGTTCTGGGTGATAGTAAACCTCTTTTTCAAGGGTTAGCACAACGTTCCACCGAACAATCAATTTTGACATCTACTCGGGTGCAGAATGATTCAAGAGCCATATGTTCTAATGAGGTTGATAGTAACAATTCAAACATTAGTCCCGGGGAAGGAGATACAGACGGTTTCACAGCCCTGCTACGTCTCAGCCCTGCTTTGATCGCTTTGATCAAGAAGGGACGTATATGTTGA

Network for GWHGAAZE017212

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	124	182	8.50E-07
PF00069.26	Pkinase	468	736	3.90E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.363
	SRR3591706	second leaf	3.050
	SRR3591707	mature leaf	3.448
	SRR3591708	Shoot apex	4.196
	SRR3591709	Stem	2.355
	SRR3591710	White floral bud	1.646
	SRR3591711	White flower	2.282
	SRR3591712	Green floral bud	2.310
	SRR3591713	Yellow flower	0.818
SRP173429	SRR8316895	Juvenile bud stage	3.101
	SRR8316896	Juvenile bud stage	2.882
	SRR8316897	Juvenile bud stage	2.518
	SRR8316894	Third green stage	1.076
	SRR8316900	Third green stage	1.720
	SRR8316901	Third green stage	1.941
	SRR8316898	Complete white stage	0.132
	SRR8316899	Complete white stage	2.643
	SRR8316903	Complete white stage	0.653
	SRR8316902	Silver flowering stage	0.789
	SRR8316904	Silver flowering stage	1.348
	SRR8316905	Silver flowering stage	0.530
	SRR8316906	Gold flowering stage	1.581
	SRR8316907	Gold flowering stage	1.490
	SRR8316908	Gold flowering stage	1.721
SRP132670	SRR6706286	Control	0.964
	SRR6706287	Light intensity 50%	1.158
	SRR6706288	Light intensity 20%	1.295
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.192
	CNS0095593	Slightly white alabastrum(diploid) 2	3.443
	CNS0095594	Slightly white alabastrum(diploid) 3	3.212
	CNS0095595	Whole white alabastrum(diploid) 2	3.271
	CNS0095596	Whole white alabastrum(diploid) 3	1.401
	CNS0095597	Whole white alabastrum(diploid) 4	1.686
	CNS0095598	Silvery flower (diploied) 1	3.311
	CNS0095599	Silvery flower (diploied) 2	3.062
	CNS0095600	Silvery flower (diploied) 3	2.367
	CNS0095601	Golden flower (diploid) 1	4.576
	CNS0095602	Golden flower (diploid) 2	3.366
	CNS0095603	Golden flower (diploid) 3	3.510
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.749
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.867
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.721
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.665
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.086
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.051
	CNS0095610	Silvery flower (tetraploid) 1	2.372
	CNS0095611	Silvery flower (tetraploid) 2	2.395
	CNS0095612	Silvery flower (tetraploid) 3	2.650
	CNS0095613	Golden flower (tetraploid) 1	1.450
	CNS0095614	Golden flower (tetraploid) 2	0.999
	CNS0095615	Golden flower (tetraploid) 3	1.047
CRA001975	CRR073297	Stem 1	4.591
	CRR073298	Stem 2	3.096
	CRR073299	Stem 3	2.865
	CRR073300	Leaf 1	1.811
	CRR073301	Leaf 2	1.935
	CRR073302	Leaf 3	0.996
	CRR073303	Juvenile bud 1	0.835
	CRR073304	Juvenile bud 2	0.112
	CRR073305	Juvenile bud 3	1.053
	CRR073306	Third green 1	0.208
	CRR073307	Third green 2	0.041
	CRR073308	Third green 3	0.240
	CRR073309	Second white 1	0.079
	CRR073310	Second white 2	0.428
	CRR073311	Second white 3	0.086
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.279
	CRR073314	Silver flowering 3	0.284
	CRR073315	Gold flowering 1	0.583
	CRR073316	Gold flowering 2	1.919
	CRR073317	Gold flowering 3	1.033
	CRR073318	Tawny withering 1	0.758
	CRR073319	Tawny withering 2	1.783
	CRR073320	Tawny withering 3	1.319