Gene detail

Detail information of GWHGAAZE017196

Functional Annotation

Database	Orthologs	Annotation
Nr	ADK12003.1	beta-amyrin synthase [Aralia elata]
Swissprot	tr\|O82146\|BAMS2_PANGI	Beta-Amyrin Synthase 2
trEMBL	tr\|D9IXA8\|D9IXA8_ARAEL	Beta-amyrin synthase {ECO:0000313\|EMBL:ADK12003.1}
TAIR10	AT1G78950.1	Terpenoid cyclases family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	2250454	2258040	+
GWHAAZE00000005	mRNA	2250454	2258040	+
GWHAAZE00000005	exon	2250454	2250654	+
GWHAAZE00000005	exon	2252881	2253066	+
GWHAAZE00000005	exon	2253491	2253688	+
GWHAAZE00000005	exon	2254434	2254518	+
GWHAAZE00000005	exon	2254742	2254908	+
GWHAAZE00000005	exon	2255048	2255236	+
GWHAAZE00000005	exon	2255418	2255531	+
GWHAAZE00000005	exon	2255701	2255820	+
GWHAAZE00000005	exon	2255942	2256064	+
GWHAAZE00000005	exon	2256173	2256271	+
GWHAAZE00000005	exon	2256526	2256582	+
GWHAAZE00000005	exon	2256679	2256725	+
GWHAAZE00000005	exon	2256813	2256956	+
GWHAAZE00000005	exon	2257070	2257247	+
GWHAAZE00000005	exon	2257485	2257565	+
GWHAAZE00000005	exon	2257677	2257760	+
GWHAAZE00000005	exon	2257900	2258040	+
GWHAAZE00000005	CDS	2250454	2250654	+
GWHAAZE00000005	CDS	2252881	2253066	+
GWHAAZE00000005	CDS	2253491	2253688	+
GWHAAZE00000005	CDS	2254434	2254518	+
GWHAAZE00000005	CDS	2254742	2254908	+
GWHAAZE00000005	CDS	2255048	2255236	+
GWHAAZE00000005	CDS	2255418	2255531	+
GWHAAZE00000005	CDS	2255701	2255820	+
GWHAAZE00000005	CDS	2255942	2256064	+
GWHAAZE00000005	CDS	2256173	2256271	+
GWHAAZE00000005	CDS	2256526	2256582	+
GWHAAZE00000005	CDS	2256679	2256725	+
GWHAAZE00000005	CDS	2256813	2256956	+
GWHAAZE00000005	CDS	2257070	2257247	+
GWHAAZE00000005	CDS	2257485	2257565	+
GWHAAZE00000005	CDS	2257677	2257760	+
GWHAAZE00000005	CDS	2257900	2258040	+

Transcript Sequence
>GWHTAAZE017216 ATGTGGAAGTTGAAGATAGGAGAAGGGGGGAATAATCCGTACCTGTACAGCACCAACAATTACGTGGGTAGGCAGACCTGGGAGTTCGAACCAGACAGCGGCACCCTGGAGGAGAGGGCCAAGGTGGAAGAGGCTCGCCTCCATTTCTGGAATAACCGCTACCACGTCAAGCCCAGCGCCGATCTTCTCTGGCGTTTTCAGTTTATAGAAGAGAAGAAATTCAGGCAAAGAATTGAACAAGTGAGGGTAGAGGAGGGAGAGGAAATAACGTACGAAACAGCGAGCACCACACTGAGGAGGGCAGTAAACTTCTTCTCCGCACTCCAGGCCCCCGATGGACATTGGCCTGCTGAAAATGCCGGCCCTCTCTTTTTCCTTCCCCCTCTGAATGAAGATGGTGGGTGGGGATTGCACATCGAGGGACATAGCACCATGTTTTGCACTGCTCTCAGCTACATATGCATGCGTATACTTGGGGAAGGACCTGAGGGTGGCCTCAACAATGCCTGTGCCAGAGGCCGCAAATGGATCCTTGACCATGGTTCTGTCACTGCCATCCCTTCCTGGGGCAAGACGTGGCTTTCGATACTTGGTGTCTTTGACTGGTCAGGAACCAACCCAATGCCCCCAGAGTTTTGGATTCTCCCTTCTTTCCTTCCCATGTATCCAGCGAAAATGTGGTGTTATTGCCGAATGGTTTACATGCCAATGTCATACTTGTATGGGAAAAGATTTGTCGGTCCAATTACTCCTCTAATTTTACAACTGAGAGAAGAACTCTATGCCCAACCCTACGATGAAGTTAATTGGAAGAAAGTACGCCATTTTTGTGCCAAGGAGGACATATACTATCCGCATCCTTTAATCCAAGATTTGATGTGGGATAGTCTCTACATAATGACGGAGCCCCTTTTGACTCGTTGGCCTTTTAATAAGTTGAGAGAAAAAGCTCTTCAAACTACCATGAAGCACATACACTATGAGGATGAGAACAGTCGATACATTACCATTGGATGTGTAGAAAAGGTCTTGTGCATGCTTGCTTGTTGGGTTGAGGATCCAAATGGGGATTATTTCAAAAAACACCTTGCCAGGATCCCAGACTATCTATGGGTTGCTGAAGATGGAATGAAAATGCAGAGTTTTGGCAGTCAAGAGTGGGATACTGGTTTCGCTATTCAAGCACTACTAGCTAGTGATCTTACTAATGAAATTGGACCTACTCTTATGAAAGGGCACAACTTCATAAAAGAGTCTCAGGTCAAGGACAATCCCTCTGGTGACTTTAAAAGCATGCACCGCCACATTTCTAAAGGATCGTGGACCTTTTCAGATCAAGATCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGATTGAAGTGCTGCCTCCTCTTCTCAAAAATGCCACCAGAAATCGTTGGGGAGAAAATGGAGCCTGAAAAACTGTATAATGCTGTCAATGTGTTGCTTCACCTACAGAGCAAAAATGGTGGTTTAGCAGCATGGGAGCCTGCAGGAGCTGCAGAATGGTTGGAGTTGCTTAACCCTACAGAATTCTTTGCAGACATAGTTATTGAGCATGAGTATGTTGAGTGCACTTCATCGGCAATCCAGGCTCTGGTTTTGTTCAAGAAGTTGTACCCTGGGCACAGGAAGAAAGAAATAGAAGGTTTTCTTACAAACGCAGTTCGATATCTTGAAAACATACAGATGCCAGATGGTTCCTGGTATGGAAACTGGGGTGTGTGTTTCACATATGGTTCCTGGTTTGCTCTTGGTGGGCTAGCGGCGGCTGGAAAAACATACTACAACTGTGCAAGTGTTCGTAAAGGTGTTAATTTTCTACTAAAGGCGCAGCGGGATAATGGTGGTTGGGGAGAAAGCTATCTTTCTTGCCCAAAAAAGGAATATGTACCTCTAGAAGGAAACCGGTCGAATTTGGTTCATACTGCGTGGGCCATGATGGGCTTGATTCATGCTGGGCAGGCGGAGAGAGACCCAACACCTCTTCACCGTGCAGCAAAACTGTTGATCAATTCTCAAATGGAAGATGGTGATTTTCCCCAACAGGAAATAACGGGAGTGTTTATGAAGAACTGCATGTTACACTATGCAGCGTACAGAAACATATACCCACTGTGGGCTCTTGCTGAATATCGCAAGCGGGTGCCATTGCCCTCCAAAAGAAGCAGCAGCATCTCTTCCTCTTGA

Network for GWHGAAZE017196

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13249.7	SQHop_cyclase_N	130	371	2.70E-29
PF13243.7	SQHop_cyclase_C	387	722	5.60E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15813	LUP4	Biosynthesis of secondary metabolites	map01110
K15813	LUP4	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0016104	biological_process	triterpenoid biosynthetic process
GO:0005811	cellular_component	lipid droplet
GO:0000250	molecular_function	lanosterol synthase activity
GO:0016866	molecular_function	intramolecular transferase activity
GO:0042300	molecular_function	beta-amyrin synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.542
	SRR3591706	second leaf	165.449
	SRR3591707	mature leaf	11.248
	SRR3591708	Shoot apex	134.561
	SRR3591709	Stem	20.441
	SRR3591710	White floral bud	10.210
	SRR3591711	White flower	20.038
	SRR3591712	Green floral bud	10.093
	SRR3591713	Yellow flower	58.487
SRP173429	SRR8316895	Juvenile bud stage	6.561
	SRR8316896	Juvenile bud stage	11.774
	SRR8316897	Juvenile bud stage	4.799
	SRR8316894	Third green stage	4.188
	SRR8316900	Third green stage	9.415
	SRR8316901	Third green stage	11.179
	SRR8316898	Complete white stage	4.488
	SRR8316899	Complete white stage	11.543
	SRR8316903	Complete white stage	7.826
	SRR8316902	Silver flowering stage	7.669
	SRR8316904	Silver flowering stage	13.040
	SRR8316905	Silver flowering stage	4.674
	SRR8316906	Gold flowering stage	42.519
	SRR8316907	Gold flowering stage	36.194
	SRR8316908	Gold flowering stage	68.564
SRP132670	SRR6706286	Control	9.860
	SRR6706287	Light intensity 50%	8.932
	SRR6706288	Light intensity 20%	10.204
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.533
	CNS0095593	Slightly white alabastrum(diploid) 2	13.395
	CNS0095594	Slightly white alabastrum(diploid) 3	13.561
	CNS0095595	Whole white alabastrum(diploid) 2	13.877
	CNS0095596	Whole white alabastrum(diploid) 3	14.633
	CNS0095597	Whole white alabastrum(diploid) 4	14.470
	CNS0095598	Silvery flower (diploied) 1	12.658
	CNS0095599	Silvery flower (diploied) 2	10.426
	CNS0095600	Silvery flower (diploied) 3	11.849
	CNS0095601	Golden flower (diploid) 1	9.467
	CNS0095602	Golden flower (diploid) 2	19.126
	CNS0095603	Golden flower (diploid) 3	20.498
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.357
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.847
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.283
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.571
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.983
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.052
	CNS0095610	Silvery flower (tetraploid) 1	12.820
	CNS0095611	Silvery flower (tetraploid) 2	8.069
	CNS0095612	Silvery flower (tetraploid) 3	7.310
	CNS0095613	Golden flower (tetraploid) 1	21.102
	CNS0095614	Golden flower (tetraploid) 2	30.844
	CNS0095615	Golden flower (tetraploid) 3	10.848
CRA001975	CRR073297	Stem 1	7.773
	CRR073298	Stem 2	7.159
	CRR073299	Stem 3	3.421
	CRR073300	Leaf 1	9.121
	CRR073301	Leaf 2	9.293
	CRR073302	Leaf 3	3.940
	CRR073303	Juvenile bud 1	5.070
	CRR073304	Juvenile bud 2	3.008
	CRR073305	Juvenile bud 3	5.713
	CRR073306	Third green 1	1.820
	CRR073307	Third green 2	2.415
	CRR073308	Third green 3	2.415
	CRR073309	Second white 1	6.400
	CRR073310	Second white 2	7.769
	CRR073311	Second white 3	11.176
	CRR073312	Silver flowering 1	35.710
	CRR073313	Silver flowering 2	24.308
	CRR073314	Silver flowering 3	25.227
	CRR073315	Gold flowering 1	1.724
	CRR073316	Gold flowering 2	4.880
	CRR073317	Gold flowering 3	1.085
	CRR073318	Tawny withering 1	40.347
	CRR073319	Tawny withering 2	45.144
	CRR073320	Tawny withering 3	15.442