Gene detail

Detail information of GWHGAAZE017157

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02987.1	3.0735E-124	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q1PEY5\|HIBC2_ARATH	9E-98	Probable 3-hydroxyisobutyryl-CoA hydrolase 2
trEMBL	tr\|A0A068U3S9\|A0A068U3S9_COFCA	1E-124	Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313\|EMBL:CDP02987.1}
TAIR10	AT2G30650.1	1E-80	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	496964	501771	+
GWHAAZE00000005	mRNA	496964	501771	+
GWHAAZE00000005	exon	496964	497041	+
GWHAAZE00000005	exon	497361	497444	+
GWHAAZE00000005	exon	497990	498074	+
GWHAAZE00000005	exon	498721	498806	+
GWHAAZE00000005	exon	500016	500146	+
GWHAAZE00000005	exon	500434	500494	+
GWHAAZE00000005	exon	500781	500879	+
GWHAAZE00000005	exon	500984	501085	+
GWHAAZE00000005	exon	501634	501771	+
GWHAAZE00000005	CDS	496964	497041	+
GWHAAZE00000005	CDS	497361	497444	+
GWHAAZE00000005	CDS	497990	498074	+
GWHAAZE00000005	CDS	498721	498806	+
GWHAAZE00000005	CDS	500016	500146	+
GWHAAZE00000005	CDS	500434	500494	+
GWHAAZE00000005	CDS	500781	500879	+
GWHAAZE00000005	CDS	500984	501085	+
GWHAAZE00000005	CDS	501634	501771	+

Transcript Sequence
>GWHTAAZE017177 CACTGGACTTTTGGTGCAAGTTTTTACAGGAAGCAACTTACTTTAGACTACTTACTTGGAACATATAAAAAGCCAGTGGTTGCACTCATAAATGGAATTGTAATGGGTGGAGGTGCTGGAATATCCATGCATGCGAGATTTCGAGTTGTTACAGAAAAGACTGTATTTGCCATGCCGGAAGCATCAATAGGATTATTTCCGGATGTTGGGGCGTCTCATTTCTTATCTCGGCTTCCTGGCTTCCTTGGAGAATATCTAGGGTTGACAGGTACAAGAATAGATGGGGGTTCCATGCTTGCATGTGGCCTTGCAACTCATTTTATCCTTTCAAAGGATATTGCTGCCTTGGAAAATGCACTAGATATGGTGGCCCCATCTAGTGACTTTGATATATCAACTATAACTGGGATCATCAACAAATATGATCAACAAGTGGACTTGACACAAAATAATATAAATTCTAGATTGGAGATCATCAACATATGCTTTTCAGGAGAAACTGTTGAAGAAATAATATCATCATTGGAGGAAGTTTTTGCTAGTAGAGCAGAGAAATGGATCGTTGGTGCAATAAACTCAATGAAAAAAGCTTCTCCGACGAGCCTAAAAGTTTTTCTAAAATCGATTAGGGATGGTCGGGCACAGAAGCTTGATCGATGTCTCATACGTGAATTTAATGCCCTTTCTCACATCTTGCGGAGAACAATTAGTGACGATTTCTTTGAGTGGGCACCTTCGAAACTGGAGTTGGTGACTGAAGAAATGGTGCAAACACTTTTCTCCAATGTTGATGATGAAGAGTGGGAATCATTAAAACTTCCGGCAAGATCCAACCTATCCTACCCTATGTTATCAAGACTCTAG

Network for GWHGAAZE017157

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	6	242	1.70E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.656
	SRR3591710	White floral bud	20.483
	SRR3591711	White flower	0.621
	SRR3591712	Green floral bud	125.178
	SRR3591713	Yellow flower	0.029
SRP173429	SRR8316895	Juvenile bud stage	10.487
	SRR8316896	Juvenile bud stage	31.768
	SRR8316897	Juvenile bud stage	13.727
	SRR8316894	Third green stage	19.908
	SRR8316900	Third green stage	227.498
	SRR8316901	Third green stage	155.780
	SRR8316898	Complete white stage	37.336
	SRR8316899	Complete white stage	250.965
	SRR8316903	Complete white stage	44.338
	SRR8316902	Silver flowering stage	1.142
	SRR8316904	Silver flowering stage	1.656
	SRR8316905	Silver flowering stage	0.901
	SRR8316906	Gold flowering stage	0.866
	SRR8316907	Gold flowering stage	1.610
	SRR8316908	Gold flowering stage	0.150
SRP132670	SRR6706286	Control	93.701
	SRR6706287	Light intensity 50%	145.025
	SRR6706288	Light intensity 20%	166.393
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.911
	CNS0095593	Slightly white alabastrum(diploid) 2	26.505
	CNS0095594	Slightly white alabastrum(diploid) 3	9.888
	CNS0095595	Whole white alabastrum(diploid) 2	41.114
	CNS0095596	Whole white alabastrum(diploid) 3	48.897
	CNS0095597	Whole white alabastrum(diploid) 4	33.160
	CNS0095598	Silvery flower (diploied) 1	0.463
	CNS0095599	Silvery flower (diploied) 2	0.405
	CNS0095600	Silvery flower (diploied) 3	2.959
	CNS0095601	Golden flower (diploid) 1	0.027
	CNS0095602	Golden flower (diploid) 2	0.261
	CNS0095603	Golden flower (diploid) 3	0.095
	CNS0095604	Slightly white alabastrum(tetraploid) 1	108.550
	CNS0095605	Slightly white alabastrum(tetraploid) 2	72.162
	CNS0095606	Slightly white alabastrum(tetraploid) 3	210.262
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.866
	CNS0095608	Whole white alabastrum(tetraploid) 2	50.935
	CNS0095609	Whole white alabastrum(tetraploid) 3	402.908
	CNS0095610	Silvery flower (tetraploid) 1	6.694
	CNS0095611	Silvery flower (tetraploid) 2	7.404
	CNS0095612	Silvery flower (tetraploid) 3	4.136
	CNS0095613	Golden flower (tetraploid) 1	2.785
	CNS0095614	Golden flower (tetraploid) 2	1.725
	CNS0095615	Golden flower (tetraploid) 3	0.261
CRA001975	CRR073297	Stem 1	22.680
	CRR073298	Stem 2	26.229
	CRR073299	Stem 3	15.157
	CRR073300	Leaf 1	118.381
	CRR073301	Leaf 2	79.842
	CRR073302	Leaf 3	114.397
	CRR073303	Juvenile bud 1	177.761
	CRR073304	Juvenile bud 2	176.540
	CRR073305	Juvenile bud 3	88.103
	CRR073306	Third green 1	1.168
	CRR073307	Third green 2	0.856
	CRR073308	Third green 3	1.590
	CRR073309	Second white 1	0.032
	CRR073310	Second white 2	0.522
	CRR073311	Second white 3	0.234
	CRR073312	Silver flowering 1	0.127
	CRR073313	Silver flowering 2	0.111
	CRR073314	Silver flowering 3	0.093
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000