Gene detail

Detail information of GWHGAAZE017138

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006362781.1	1.5343E-125	PREDICTED: shikimate kinase, chloroplastic-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q00497\|SK_SOLLC	4E-125	Shikimate kinase, chloroplastic (Precursor)
trEMBL	tr\|M1BDG7\|M1BDG7_SOLTU	6E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400042674}
TAIR10	AT2G21940.4	1E-80	shikimate kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	92536325	92542940	+
GWHAAZE00000004	mRNA	92536325	92542940	+
GWHAAZE00000004	exon	92536325	92536529	+
GWHAAZE00000004	exon	92537372	92537430	+
GWHAAZE00000004	exon	92537660	92537714	+
GWHAAZE00000004	exon	92537796	92537868	+
GWHAAZE00000004	exon	92538305	92538392	+
GWHAAZE00000004	exon	92542181	92542263	+
GWHAAZE00000004	exon	92542361	92542490	+
GWHAAZE00000004	exon	92542848	92542940	+
GWHAAZE00000004	CDS	92536325	92536529	+
GWHAAZE00000004	CDS	92537372	92537430	+
GWHAAZE00000004	CDS	92537660	92537714	+
GWHAAZE00000004	CDS	92537796	92537868	+
GWHAAZE00000004	CDS	92538305	92538392	+
GWHAAZE00000004	CDS	92542181	92542263	+
GWHAAZE00000004	CDS	92542361	92542490	+
GWHAAZE00000004	CDS	92542848	92542940	+

Transcript Sequence
>GWHTAAZE017158 ATGGAGGCTAGAATTTTCCCTAGCTTGCAGTTGTCAACATGGATTGATTCAGAAAAGATTGTGAGGAAACCTAGTGGTTTATTGCGGTTTCATCAGAGGTCCACGGAAAAAGAGAGGCTTCAAATGCTTGTCTCTTGTCATTTGCAATACAGAAGAGCTGCTAAGAGGCATAATCTGGTCTCATGTTCTTCTCAGAACCATCAAGCTTCAGCATTGGAGTTTGAAAGCTTGCCTGCTTCAATTGAAGAAGCTCTAGTTTTAAAGAGTAAGTCAGAAGAAATTGAACCATATTTAGATGACCGGTGTATATATCTTGTTGGAATGATGGGCTCAGGTAAAACAACTATTGGCAGGATTTTGGCAGAAGTACTTGGTTATTCATTTTTTGACAGTGACAAGTTGATAGAGCAGGATGTTGGGGGGACTGTTGTATCTGACATCTTTAAGCTACATGGTGAGAGCTTCTTCAGAAATACTGAGACTAAGGTATTGAAGAAGCTGTCTTTTATGCACCGGCTAGTTGTTTCCACTGGTGGGGGTGCAGTTGTTCGGCCTATCAATTGGAAATACATGCACAAGGGGATTAGTGTTTGGTTAGATGTACCTCTAGAAGCCTTGGCACATAGAATTACATCTGTAGGAACGAATTCTCGCCCACTTTTGCATCATGGAGAAGGCGACACTTACACAAAGACTTTCAAGCGCTTATCTACTCTTTGGGAAGAGAGAAGTGAAGCGTACACCAATGCCAATGCACGGGTTTCTCTAGATAGTATGATGCCGTGA

Network for GWHGAAZE017138

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01202.23	SKI	109	258	1.10E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00891	aroK, aroL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.083
	SRR3591706	second leaf	20.516
	SRR3591707	mature leaf	17.244
	SRR3591708	Shoot apex	10.312
	SRR3591709	Stem	31.817
	SRR3591710	White floral bud	6.115
	SRR3591711	White flower	18.163
	SRR3591712	Green floral bud	10.163
	SRR3591713	Yellow flower	7.793
SRP173429	SRR8316895	Juvenile bud stage	8.698
	SRR8316896	Juvenile bud stage	9.369
	SRR8316897	Juvenile bud stage	0.716
	SRR8316894	Third green stage	3.264
	SRR8316900	Third green stage	10.489
	SRR8316901	Third green stage	8.781
	SRR8316898	Complete white stage	4.618
	SRR8316899	Complete white stage	11.995
	SRR8316903	Complete white stage	8.685
	SRR8316902	Silver flowering stage	8.488
	SRR8316904	Silver flowering stage	11.964
	SRR8316905	Silver flowering stage	7.050
	SRR8316906	Gold flowering stage	39.253
	SRR8316907	Gold flowering stage	37.068
	SRR8316908	Gold flowering stage	34.180
SRP132670	SRR6706286	Control	6.104
	SRR6706287	Light intensity 50%	6.624
	SRR6706288	Light intensity 20%	7.657
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.396
	CNS0095593	Slightly white alabastrum(diploid) 2	4.607
	CNS0095594	Slightly white alabastrum(diploid) 3	6.606
	CNS0095595	Whole white alabastrum(diploid) 2	5.424
	CNS0095596	Whole white alabastrum(diploid) 3	8.291
	CNS0095597	Whole white alabastrum(diploid) 4	4.367
	CNS0095598	Silvery flower (diploied) 1	4.897
	CNS0095599	Silvery flower (diploied) 2	5.783
	CNS0095600	Silvery flower (diploied) 3	6.820
	CNS0095601	Golden flower (diploid) 1	5.129
	CNS0095602	Golden flower (diploid) 2	6.918
	CNS0095603	Golden flower (diploid) 3	7.693
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.396
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.438
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.258
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.118
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.201
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.876
	CNS0095610	Silvery flower (tetraploid) 1	7.360
	CNS0095611	Silvery flower (tetraploid) 2	6.641
	CNS0095612	Silvery flower (tetraploid) 3	6.521
	CNS0095613	Golden flower (tetraploid) 1	12.519
	CNS0095614	Golden flower (tetraploid) 2	10.427
	CNS0095615	Golden flower (tetraploid) 3	9.610
CRA001975	CRR073297	Stem 1	9.066
	CRR073298	Stem 2	4.779
	CRR073299	Stem 3	6.562
	CRR073300	Leaf 1	5.329
	CRR073301	Leaf 2	5.496
	CRR073302	Leaf 3	4.441
	CRR073303	Juvenile bud 1	3.770
	CRR073304	Juvenile bud 2	3.142
	CRR073305	Juvenile bud 3	4.279
	CRR073306	Third green 1	18.744
	CRR073307	Third green 2	12.586
	CRR073308	Third green 3	16.039
	CRR073309	Second white 1	27.184
	CRR073310	Second white 2	30.402
	CRR073311	Second white 3	30.009
	CRR073312	Silver flowering 1	31.553
	CRR073313	Silver flowering 2	36.038
	CRR073314	Silver flowering 3	22.081
	CRR073315	Gold flowering 1	4.891
	CRR073316	Gold flowering 2	8.391
	CRR073317	Gold flowering 3	6.025
	CRR073318	Tawny withering 1	9.908
	CRR073319	Tawny withering 2	7.745
	CRR073320	Tawny withering 3	13.934