Gene detail

Detail information of GWHGAAZE017123

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006381548.1	0	hypothetical protein POPTR_0006s13740g [Populus trichocarpa]
Swissprot	tr\|Q3E989\|PME54_ARATH	2E-142	Pectinesterase 54 (Precursor)
trEMBL	tr\|U5G7E3\|U5G7E3_POPTR	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT5G20860.1	4E-118	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	92201616	92203620	-
GWHAAZE00000004	mRNA	92201616	92203620	-
GWHAAZE00000004	exon	92202975	92203620	-
GWHAAZE00000004	exon	92201616	92202313	-
GWHAAZE00000004	CDS	92202975	92203620	-
GWHAAZE00000004	CDS	92201616	92202313	-

Transcript Sequence
>GWHTAAZE017143 ATGATGCTAAGTGAATTTTTTTTTCATTGTGCAGAATATTGTCATAAGCTAATGATGATGTCGCAAAAGCAGCTAAACCAAGCCCTATCAGCGCTGAGAGAGTCACCGAGAAAACACAAGCACGACATACAGACATGGCTAAGCGCAGCTTTGACATTCCAACAAACATGTAGAGATGTGGCGGACATTCATGCCAGGTCGAATGAGTTAATGAGTCAAACGTCCCAAAAAATGGATTATTTATCGAAATTATGTAGCAATTCACTGGCCCTTGTAAACCGAATCAATGGCAGTACTAGTAAAAAGACTCGCCGTGTACTTGTTGGTGAAGAAGATTCACAATTGTTTCCAAGTTGGGTGTTGGCTGGTGATAGGAAGCTATTGGTTGAGACGGATGGTACTGCGGTTAAAGCAAATGCAGTGGTTGCGAAAGATGGGTCGGGTAACTATGAGACAATATCGGCAGCCATAAAAGCCGCGAATGGGAAGAGATTTGTGATATATGTGAAGGCGGGAGTTTACAAGGAGAAGATAAACACTGAGAAAGATGAAATAACGTTGATAGGGGAAGGCAAAGATACTACTATTATTGTGGGTGATGATAGTGTTGCTGGGGGTAATACCTTGAAAGGCTCTGCTACATTTACCATTTTCGGAAATGGATTCATCGCACGTGACATAAGCTTCAGAAATACGGCGGGGCCCAACGGAGAACAAGCGGTGGCCCTCACCATCGCCTCCGACCACTCCGTCCTTTACAGATGCAGCATCTCCGGTTACCAAGACACCCTATACGCCCTCTCCCTCCGCCAGTTCTACCGAGAATGCGACATCTATGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGCCGTCTTCCAAAATTGCTATATAGTCCTCCGCCGTCCCCACACCAGGGGTTCCTACAACGTCATCCTAGCCAATGGTCGCAGCGACCCTGGCCAAGCCACCGGTTTTTCCCTCCAAAACTGCAAGATCGTCGCCGGATCTGACTTAGCTCCGGTGAAAGGCTCGTTCAATTCGTATTTGGGGAGGGGTTGGAGGGAGTATTCGAGATCCGTGATTATGCAGTCGATGATTGATGGTGCGATTACGCCGAGAGGTTGGATCGAATGGGATGGGGCAAAGAGTAATTCTCTGAGAACAGTGTATTTTGCAGAGTATATGAATGTGGGTCCCGGGGCGGGGACTTCGAGGAGGGTTCAGTGGCCTGGGTTCCATGTTCTCGAGAAAGAGGAGGCTGTTAAATTTACGGTTGGTAATTTTCTTGGAGGAGCTTCGTGGTTGCCCTCTACCGGAGTAATTTTCGACACCGGCCTCTAA

Network for GWHGAAZE017123

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	10	91	1.10E-14
PF01095.20	Pectinesterase	139	432	8.30E-121

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0004857	molecular_function	enzyme inhibitor activity
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.340
	SRR3591706	second leaf	26.379
	SRR3591707	mature leaf	48.905
	SRR3591708	Shoot apex	2.560
	SRR3591709	Stem	212.968
	SRR3591710	White floral bud	4.010
	SRR3591711	White flower	1.881
	SRR3591712	Green floral bud	2.721
	SRR3591713	Yellow flower	0.377
SRP173429	SRR8316895	Juvenile bud stage	2.126
	SRR8316896	Juvenile bud stage	2.298
	SRR8316897	Juvenile bud stage	0.985
	SRR8316894	Third green stage	1.327
	SRR8316900	Third green stage	5.452
	SRR8316901	Third green stage	3.664
	SRR8316898	Complete white stage	6.839
	SRR8316899	Complete white stage	26.477
	SRR8316903	Complete white stage	13.222
	SRR8316902	Silver flowering stage	5.208
	SRR8316904	Silver flowering stage	3.645
	SRR8316905	Silver flowering stage	3.112
	SRR8316906	Gold flowering stage	4.662
	SRR8316907	Gold flowering stage	5.309
	SRR8316908	Gold flowering stage	1.637
SRP132670	SRR6706286	Control	12.494
	SRR6706287	Light intensity 50%	10.605
	SRR6706288	Light intensity 20%	10.810
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.333
	CNS0095593	Slightly white alabastrum(diploid) 2	3.206
	CNS0095594	Slightly white alabastrum(diploid) 3	5.321
	CNS0095595	Whole white alabastrum(diploid) 2	2.675
	CNS0095596	Whole white alabastrum(diploid) 3	4.115
	CNS0095597	Whole white alabastrum(diploid) 4	2.772
	CNS0095598	Silvery flower (diploied) 1	11.522
	CNS0095599	Silvery flower (diploied) 2	3.333
	CNS0095600	Silvery flower (diploied) 3	17.705
	CNS0095601	Golden flower (diploid) 1	3.659
	CNS0095602	Golden flower (diploid) 2	12.603
	CNS0095603	Golden flower (diploid) 3	12.601
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.012
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.914
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.113
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.023
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.542
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.359
	CNS0095610	Silvery flower (tetraploid) 1	16.036
	CNS0095611	Silvery flower (tetraploid) 2	19.477
	CNS0095612	Silvery flower (tetraploid) 3	4.827
	CNS0095613	Golden flower (tetraploid) 1	7.466
	CNS0095614	Golden flower (tetraploid) 2	5.400
	CNS0095615	Golden flower (tetraploid) 3	5.099
CRA001975	CRR073297	Stem 1	3.826
	CRR073298	Stem 2	3.833
	CRR073299	Stem 3	3.638
	CRR073300	Leaf 1	5.260
	CRR073301	Leaf 2	6.661
	CRR073302	Leaf 3	7.338
	CRR073303	Juvenile bud 1	23.125
	CRR073304	Juvenile bud 2	9.770
	CRR073305	Juvenile bud 3	36.213
	CRR073306	Third green 1	6.249
	CRR073307	Third green 2	9.650
	CRR073308	Third green 3	10.279
	CRR073309	Second white 1	3.305
	CRR073310	Second white 2	1.131
	CRR073311	Second white 3	1.220
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.438
	CRR073314	Silver flowering 3	1.274
	CRR073315	Gold flowering 1	10.671
	CRR073316	Gold flowering 2	7.165
	CRR073317	Gold flowering 3	16.394
	CRR073318	Tawny withering 1	31.753
	CRR073319	Tawny withering 2	10.556
	CRR073320	Tawny withering 3	28.967