Gene detail

Detail information of GWHGAAZE017109

Functional Annotation

Database	Orthologs	Annotation
Nr	AGH32917.1	ketoacyl-ACP synthase II [Camellia chekiangoleosa]
Swissprot	tr\|Q9C9P4\|KASC2_ARATH	3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic (Precursor)
trEMBL	tr\|M4QW40\|M4QW40_9ERIC	Ketoacyl-ACP synthase II {ECO:0000313\|EMBL:AGH32917.1}
TAIR10	AT1G74960.3	fatty acid biosynthesis 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	91895520	91903922	+
GWHAAZE00000004	mRNA	91895520	91903922	+
GWHAAZE00000004	exon	91895520	91895916	+
GWHAAZE00000004	exon	91896035	91896094	+
GWHAAZE00000004	exon	91896803	91897008	+
GWHAAZE00000004	exon	91897090	91897293	+
GWHAAZE00000004	exon	91897891	91898001	+
GWHAAZE00000004	exon	91898091	91898186	+
GWHAAZE00000004	exon	91898343	91898388	+
GWHAAZE00000004	exon	91898639	91898718	+
GWHAAZE00000004	exon	91899044	91899112	+
GWHAAZE00000004	exon	91899180	91899264	+
GWHAAZE00000004	exon	91900816	91900872	+
GWHAAZE00000004	exon	91901785	91901939	+
GWHAAZE00000004	exon	91902038	91902118	+
GWHAAZE00000004	exon	91902707	91902766	+
GWHAAZE00000004	exon	91903806	91903922	+
GWHAAZE00000004	five_prime_UTR	91895520	91895531	+
GWHAAZE00000004	CDS	91895532	91895916	+
GWHAAZE00000004	CDS	91896035	91896094	+
GWHAAZE00000004	CDS	91896803	91897008	+
GWHAAZE00000004	CDS	91897090	91897293	+
GWHAAZE00000004	CDS	91897891	91898001	+
GWHAAZE00000004	CDS	91898091	91898186	+
GWHAAZE00000004	CDS	91898343	91898388	+
GWHAAZE00000004	CDS	91898639	91898718	+
GWHAAZE00000004	CDS	91899044	91899112	+
GWHAAZE00000004	CDS	91899180	91899264	+
GWHAAZE00000004	CDS	91900816	91900872	+
GWHAAZE00000004	CDS	91901785	91901939	+
GWHAAZE00000004	CDS	91902038	91902118	+
GWHAAZE00000004	CDS	91902707	91902766	+
GWHAAZE00000004	CDS	91903806	91903922	+

Transcript Sequence
>GWHTAAZE017129 TGGTACACTTGTATGGCGGCATCATCGTCTATGGTGTGTACATGGCTAGTGGCGGCTTGCATGTCAGTCGCTTGTCAAAATGTCCAGCCCAAGATGATGCTTCTTCACTCTTCTTCGCCGTCTAGACGCAATCGTAGTAGAAGGAGGAGGATTTTCTTATCTAATAAATGCATTGCCGTTGGTGGTGGTGGTGGTGTTGATTTTCAGGGGGGTAATCTAATGTCTTCTTTTTGTGGATCGATGATGAGTTCTTGCTTGGCCTTCGAGCCTTGTGATGACTATTGTAACTCTAAAGGCCTTTCTTCCTCAGACTTTTTCGGTGCTTCTATTTTCGGATCCACCACTGTTCCAATGGGTCGCAGGCGGAGGCGGATGATCAATCCTGCTTCCCGTTCAGATTGTGCCATTCTGGATGAATTTTATGTTATTAGTGCTGTTTACGGATTTGCAAAACCTGGGGAAGTGATGGCTGTAGCTGTGCAACCTTCAATGGATGTTTTGACAAAGAAGAAACCTCCTACGAAGCAAAGGAGAGTGGTTGTGACTGGAATGGGGGTTGAGACCCCAATTGGTCATGATCCAGATGTATTTTACAACAACCTACTTGAAGGTGTCAGTGGCATAAGTGAGATAGAGGCTTTTGATTGTTCCCTTTTCCCAACTAGAATAGCTGGAGAGATTAAGTCTTATTCGACAGATGGATGGGTAGCACCAAAACTTTCGAGGAGGATGGACCGATTCATGTTGTACATGCTAACAGCTGGGAAGAAAGCTTTGGCAAATGCTGGAATTACAGATGACGTAATGGATGAACTAGATAAAACTAGATGTGGGGTTTTGATCGGCTCCGCTATGGGTGGCATGAAGGTTTTCAATGATGCAATAGAAGCATTGAGGATCTCATACAAGAAGATGAATCCTTTTTGTGTGCCATTTGCAACTACGAATATGGGTTCTGCAGTGCTTGCCATGGATCTGGGATGGATGGGACCCAACTATTCTATCTCTACTGCTTGTGCCACGAGCAACTTCTGCATTCTGAATGCAGCAAACCACATCATCAGAGGTGAAGCTGATATGATGCTTTGTGGTGGCTCGGATGCAGTAATCATACCTATAGGATTGGGAGGTTTTGTGGCATGCAGAGCACTTTCTCAAAGAAACAGTGATCCTACAAAAGCTTCACGCCCATGGGATAGTAGTCGTGATGGATTTGTTATGGGAGAAGGAGCTGGAGTATTGCTTTTAGAAGAACTTGAGCATGCTAAGAAAAGAGGTGCAACAATCTATGCAGAATTTCTGGGTGGAAGTTTCACTTGTGATGCATATCATATGACAGAGCCTCACCCTGAAGGAAGCTTGAGTCAGAGGCTGGGTTGCTTTGATGGCTTCTCAATCCTCGCTGCCAAAGGGGCTGGTGTAATTCTATGCATAGAGAAGGCCTTAGCTCAGTCAGGTGTATCAAGGGAAGATGTGAACTACATAAATGCACATGCTACTTCCACACCAGCTGGAGACCTCAAGGAGTACAATGCCCTCCTTCATTGTTTTGGCGAGAATCAAGAGTTACGAGTGAACTCTACAAAATCCATGATTGGTCACCTACTAGGAGCAGCAGGTGCAGTCGAAGCTGTTGCAACAGTGCAGGCAATACGGACGGGATGGGTTCATCCAAATATCAATCTGGAAAACCCAGACGAAGGCGTGGATAAGAATGTGCTTGTGGGCTCAAAGAAAGAAAGACTAGACATAAAGGTGGCGTTGTCTAATTCATTTGGGTTTGGTGGCCACAACTCATCGATCTTGTTTGCTCCTTACAAGTAG

Network for GWHGAAZE017109

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00109.27	ketoacyl-synt	173	418	4.50E-60
PF02801.23	Ketoacyl-synt_C	439	559	9.10E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09458	fabF, OXSM, CEM1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	64.850
	SRR3591706	second leaf	27.565
	SRR3591707	mature leaf	25.151
	SRR3591708	Shoot apex	33.987
	SRR3591709	Stem	72.954
	SRR3591710	White floral bud	11.373
	SRR3591711	White flower	10.918
	SRR3591712	Green floral bud	27.343
	SRR3591713	Yellow flower	16.512
SRP173429	SRR8316895	Juvenile bud stage	25.700
	SRR8316896	Juvenile bud stage	35.789
	SRR8316897	Juvenile bud stage	11.930
	SRR8316894	Third green stage	16.532
	SRR8316900	Third green stage	40.945
	SRR8316901	Third green stage	34.396
	SRR8316898	Complete white stage	5.162
	SRR8316899	Complete white stage	47.067
	SRR8316903	Complete white stage	9.195
	SRR8316902	Silver flowering stage	3.887
	SRR8316904	Silver flowering stage	5.671
	SRR8316905	Silver flowering stage	3.375
	SRR8316906	Gold flowering stage	11.376
	SRR8316907	Gold flowering stage	10.255
	SRR8316908	Gold flowering stage	13.184
SRP132670	SRR6706286	Control	31.320
	SRR6706287	Light intensity 50%	35.461
	SRR6706288	Light intensity 20%	38.544
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.709
	CNS0095593	Slightly white alabastrum(diploid) 2	16.901
	CNS0095594	Slightly white alabastrum(diploid) 3	17.555
	CNS0095595	Whole white alabastrum(diploid) 2	14.950
	CNS0095596	Whole white alabastrum(diploid) 3	16.960
	CNS0095597	Whole white alabastrum(diploid) 4	13.336
	CNS0095598	Silvery flower (diploied) 1	11.281
	CNS0095599	Silvery flower (diploied) 2	13.751
	CNS0095600	Silvery flower (diploied) 3	11.053
	CNS0095601	Golden flower (diploid) 1	10.736
	CNS0095602	Golden flower (diploid) 2	11.854
	CNS0095603	Golden flower (diploid) 3	9.528
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.737
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.643
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.581
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.943
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.903
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.795
	CNS0095610	Silvery flower (tetraploid) 1	5.835
	CNS0095611	Silvery flower (tetraploid) 2	6.106
	CNS0095612	Silvery flower (tetraploid) 3	2.433
	CNS0095613	Golden flower (tetraploid) 1	1.150
	CNS0095614	Golden flower (tetraploid) 2	4.277
	CNS0095615	Golden flower (tetraploid) 3	0.886
CRA001975	CRR073297	Stem 1	33.005
	CRR073298	Stem 2	37.399
	CRR073299	Stem 3	37.898
	CRR073300	Leaf 1	43.709
	CRR073301	Leaf 2	38.056
	CRR073302	Leaf 3	35.760
	CRR073303	Juvenile bud 1	31.645
	CRR073304	Juvenile bud 2	25.857
	CRR073305	Juvenile bud 3	38.146
	CRR073306	Third green 1	1.283
	CRR073307	Third green 2	1.213
	CRR073308	Third green 3	1.873
	CRR073309	Second white 1	1.458
	CRR073310	Second white 2	1.400
	CRR073311	Second white 3	0.879
	CRR073312	Silver flowering 1	2.669
	CRR073313	Silver flowering 2	2.496
	CRR073314	Silver flowering 3	1.478
	CRR073315	Gold flowering 1	19.054
	CRR073316	Gold flowering 2	28.038
	CRR073317	Gold flowering 3	22.256
	CRR073318	Tawny withering 1	51.417
	CRR073319	Tawny withering 2	26.897
	CRR073320	Tawny withering 3	55.052