Detail information of GWHGAAZE017024


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006854035.11.2918E-171hypothetical protein AMTR_s00048p00058600 [Amborella trichopoda]
Swissprottr|Q9M3V8|RS6_ASPOF2E-16840S ribosomal protein S6
trEMBLtr|U5D275|U5D275_AMBTC5E-17240S ribosomal protein S6 {ECO:0000256|PIRNR:PIRNR002129}
TAIR10AT5G10360.12E-115Ribosomal protein S6e

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8985475889857974-
GWHAAZE00000004mRNA8985475889857974-
GWHAAZE00000004exon8985475889854996-
GWHAAZE00000004exon8985576389856035-
GWHAAZE00000004exon8985623489856342-
GWHAAZE00000004exon8985644589856502-
GWHAAZE00000004exon8985780289857866-
GWHAAZE00000004exon8985796989857974-
GWHAAZE00000004CDS8985796989857974-
GWHAAZE00000004CDS8985780289857866-
GWHAAZE00000004CDS8985644589856502-
GWHAAZE00000004CDS8985623489856342-
GWHAAZE00000004CDS8985576389856035-
GWHAAZE00000004CDS8985475889854996-
Transcript Sequence

Network for GWHGAAZE017024

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01092.20Ribosomal_S6e11283.00E-56
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02991RP-S6e, RPS6 Ribosome map03010
Apelin signaling pathwaymap04371
HIF-1 signaling pathwaymap04066
PI3K-Akt signaling pathwaymap04151
mTOR signaling pathwaymap04150
Insulin signaling pathwaymap04910
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf480.610
SRR3591706second leaf212.748
SRR3591707mature leaf86.707
SRR3591708Shoot apex596.316
SRR3591709Stem211.600
SRR3591710White floral bud173.997
SRR3591711White flower242.420
SRR3591712Green floral bud395.758
SRR3591713Yellow flower151.650
SRP173429 SRR8316895Juvenile bud stage 289.456
SRR8316896Juvenile bud stage 403.590
SRR8316897Juvenile bud stage 216.138
SRR8316894Third green stage 159.936
SRR8316900Third green stage 536.148
SRR8316901Third green stage 498.214
SRR8316898Complete white stage 69.896
SRR8316899Complete white stage 449.210
SRR8316903Complete white stage 112.162
SRR8316902Silver flowering stage75.453
SRR8316904Silver flowering stage70.735
SRR8316905Silver flowering stage38.485
SRR8316906Gold flowering stage 124.487
SRR8316907Gold flowering stage 124.324
SRR8316908Gold flowering stage 186.070
SRP132670SRR6706286Control416.065
SRR6706287Light intensity 50%412.872
SRR6706288Light intensity 20%466.606
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1404.522
CNS0095593Slightly white alabastrum(diploid) 2504.453
CNS0095594Slightly white alabastrum(diploid) 3390.906
CNS0095595Whole white alabastrum(diploid) 2356.277
CNS0095596Whole white alabastrum(diploid) 3428.590
CNS0095597Whole white alabastrum(diploid) 4274.127
CNS0095598Silvery flower (diploied) 1212.043
CNS0095599Silvery flower (diploied) 2200.608
CNS0095600Silvery flower (diploied) 3146.436
CNS0095601Golden flower (diploid) 1171.334
CNS0095602Golden flower (diploid) 2145.017
CNS0095603Golden flower (diploid) 3143.590
CNS0095604Slightly white alabastrum(tetraploid) 1385.325
CNS0095605Slightly white alabastrum(tetraploid) 2383.927
CNS0095606Slightly white alabastrum(tetraploid) 3490.638
CNS0095607Whole white alabastrum(tetraploid) 1190.057
CNS0095608Whole white alabastrum(tetraploid) 2180.378
CNS0095609Whole white alabastrum(tetraploid) 3415.049
CNS0095610Silvery flower (tetraploid) 1143.712
CNS0095611Silvery flower (tetraploid) 2144.062
CNS0095612Silvery flower (tetraploid) 391.287
CNS0095613Golden flower (tetraploid) 165.157
CNS0095614Golden flower (tetraploid) 2114.123
CNS0095615Golden flower (tetraploid) 354.869
CRA001975CRR073297Stem 1494.655
CRR073298Stem 2510.212
CRR073299Stem 3588.567
CRR073300Leaf 1484.548
CRR073301Leaf 2522.750
CRR073302Leaf 3735.013
CRR073303Juvenile bud 1512.821
CRR073304Juvenile bud 2391.420
CRR073305Juvenile bud 3422.493
CRR073306Third green 138.961
CRR073307Third green 243.448
CRR073308Third green 355.655
CRR073309Second white 169.004
CRR073310Second white 258.046
CRR073311Second white 333.886
CRR073312Silver flowering 151.989
CRR073313Silver flowering 278.733
CRR073314Silver flowering 367.449
CRR073315Gold flowering 1208.502
CRR073316Gold flowering 2244.861
CRR073317Gold flowering 3226.670
CRR073318Tawny withering 1460.262
CRR073319Tawny withering 2373.581
CRR073320Tawny withering 3492.742