Gene detail

Detail information of GWHGAAZE017004

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010645223.1	PREDICTED: calmodulin-binding transcription activator 3 [Vitis vinifera]
Swissprot	tr\|Q8GSA7\|CMTA3_ARATH	Calmodulin-binding transcription activator 3
trEMBL	tr\|F6HWM2\|F6HWM2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59087.1}
TAIR10	AT2G22300.2	signal responsive 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	89224323	89251012	+
GWHAAZE00000004	mRNA	89224323	89251012	+
GWHAAZE00000004	exon	89224323	89224445	+
GWHAAZE00000004	exon	89233479	89233518	+
GWHAAZE00000004	exon	89236178	89236297	+
GWHAAZE00000004	exon	89236441	89236556	+
GWHAAZE00000004	exon	89236790	89236878	+
GWHAAZE00000004	exon	89237284	89237326	+
GWHAAZE00000004	exon	89240092	89240299	+
GWHAAZE00000004	exon	89240936	89241046	+
GWHAAZE00000004	exon	89241939	89242264	+
GWHAAZE00000004	exon	89243659	89244156	+
GWHAAZE00000004	exon	89244632	89245299	+
GWHAAZE00000004	exon	89246454	89247042	+
GWHAAZE00000004	exon	89247669	89247992	+
GWHAAZE00000004	exon	89250899	89251012	+
GWHAAZE00000004	CDS	89224323	89224445	+
GWHAAZE00000004	CDS	89233479	89233518	+
GWHAAZE00000004	CDS	89236178	89236297	+
GWHAAZE00000004	CDS	89236441	89236556	+
GWHAAZE00000004	CDS	89236790	89236878	+
GWHAAZE00000004	CDS	89237284	89237326	+
GWHAAZE00000004	CDS	89240092	89240299	+
GWHAAZE00000004	CDS	89240936	89241046	+
GWHAAZE00000004	CDS	89241939	89242264	+
GWHAAZE00000004	CDS	89243659	89244156	+
GWHAAZE00000004	CDS	89244632	89245299	+
GWHAAZE00000004	CDS	89246454	89247042	+
GWHAAZE00000004	CDS	89247669	89247992	+
GWHAAZE00000004	CDS	89250899	89251012	+

Transcript Sequence
>GWHTAAZE017024 ATGAGTAGACCGCCAGGTTCCTCTTCCTCTTATAGAGGACAGAGAGGTAGAGGAGGTCCTCCTAGATCTCCTGCTCGAAATATTGGCACTTCTGGGATTAAATCCCAAGCTTCTTCTTCTCAGGGAGAATTGTGGCGAAATATTGTTAATTGTATATGCAGGTATATTGAGCAAATACTGTTAGAAGCGCAACATCGATGGTTACGCCCGGCTGAAATTTGTGAAATTCTTCAGAATTACAAACGATTTCGCATTGCTCCTGAGCCTGCAAATAAACCTCCAAGTGGTTCACTTTTTCTTTTTGACCGGAAGGTGTTGAGGTATTTCAGAAAAGATGGTCATAACTGGAGGAAGAAAAAAGATGGAAAGACAGTTAAGGAGGCTCATGAAAGGCTCAAGGCTGGAAGCGTTGATGTGTTGCATTGCTACTATGCCCATGGAGAAGATAATGAAAATTTTCAAAGGCGTAGCTATTGGTTGCTTGAAGAGGAGCGCTCACACATAGTTCTTGTCCATTACCGAGAAGTAAAGGGAAATAGGACAAACTATAACCGCGTTAGAGAGGCTGAAGAATCTATTCCCAATTCTGTTGAAACCGAGGAAACTAGACTTAATTCTGAGGTGGAAAGCTCTGTATCTTCAAAGCTTCAACCATATAGTTACCAAGTAACTCCACAAACCACCGATACCACCAGCCTCAGCAGCGCTCACACCACGGAATATGAAGATGCTGAATCAGCATATAATCAGCAACCTAGTTCCAGTTTCTACTCTTTTCTTGAGCAACCACCTCTGATGGGAAGAAAGGATGATGCACTCTCTACTCCGTATTATCCAGCTCCTTTCCCAGATGATTATCAAGGAAAGTATCCACCTGTTTCTGAGACCAATAGTGTCTCACTTGCTGAAGGAGATAAAGGTAAAAACAGTTCCAGTGCTGGTTTGACATATGAGCCCTGGAAACAGCTTGACCTCCAATCATGGGAGAATCTCTTGCAAAACAATACATCCGGAATTCAGTTTGCCCCTTTTCAGTCATTACTTTCCTCTGCACAACCTGATACTGAGAATATTTTACCTGGAAGAGGAAATGAAATATTGGGGCAGATATTCACAGATGCCTTTGGTGAAAAGCACGAGCTTGGGAATTATCCACAAGGCGAGGAAGAGTGGCAGACTTCTGAAAGTGATGCCTCGCACATATCCAAGTGGTCCTTGGATCAGAAGTTGGATACAGAGTTAGCATATGATTTCACCAATAAATTCCATGATGCCGAGCAAAATAATCATGGAGATCTTCAGATACAGCTTAGAAATGTGGAAAGTGGAAATTCTCTTAAACCAGAGTCAGAGAGCAATTTGACTGGAGAAAAATCCAATTATTCACCTTTGAAGCCTCCTTTGTTAAGTAACTTTATGAACGAAGGTCTTAAGAAGCTCGACAGCTTTGACCGGTGGATGAGTAAAGAACTTGGAGATGTAAACGAGTCAAAAGTGCAATCCAGCTCTGGTAGTTATTGGGAGGTTGTTGGAAATGAGGACGGAATTGATGATTCCAGCATTTCCCCTCAAGTGCGTTTAGACACCTATATGAGTCCCTCTCTCTCACAGGATCAGCTCTTCAGCATTATCGATTTCTCACCAAATTGGGCAAGTTCTGGTGCAAATATCAAGGTTCTGATTACGGGAAGATTCCTGAAGAGTCAACAAGATTTGGAAAAGTGTAAATGGGCTTGTATGTTTGGGGAACTGGAAGTTCCAGCAGAGGTCGTAGCAGATGGTGTTCTTCGTTGCCATACACCTGACCACAAGCCTGGAAGGGTTCCTTTTTACGTAACCTGTTCCAACAGAGTTGCATGTAGTGAAGTACGGGAATTTGAGTTCCAAGATACCGACATTCAAGATGTAGATGTTACTGATATTAGCGGTGGCTCAAATGAAGTTGTTCTTCATATGCGATTTGGAAAATTTCTCTCTCTACAATCTTCCAGTTCTCAAAGCTCCGTTGATCCCACCTTGAGCAGTAAAATCAGCTCATTATTGGAAGAGAATGACAGTGAGTGGGACCAAATGGCAATGTTTACTTCTGAGCTTGAAAAAGTAAGGGATCGGCTGCTTCAAAGGCTGCTGAAGGAGAAGTTATATGCATGGCTCCTTCATAAGGCTGGTGAAGGTGGAAAAGGGCCTAGTGTATTAGATGAGGGTGGCCAAGGTGTGCTGCATTTTGCAGCTGCTCTTGGTTATGACTGGGCTATCGAACCGACAATAGCTGCGGGTGTTAGTATCAATTTCCGTGATGTTAATGGATGGACTGCACTTCATTGGGCTGCATCTTATGGCAGAGAGCGAACAGTGGGTTTCCTTATCTCCCTTGGTGCGGATCCCGGAGCATTAACAGACCCTACGCCCCAATACCCATCAGGCAGACCACCTGCAGACCTAGCTTCTAGCAATGGTCACAAGGGAATTGCTGGTTATCTTGCTGAATCGGCCTTGAGTTACCACCTTTCATCACTTGGGTTAAAGGACATCAAAGAAGCCGATGGTCTCAATAATATTTCTAACTTAGAAGCTGTACAATCAGTTTCTGGTCGGACCGCCTCTCCAATTAATGATGGGGACTTGCCCGACGATAGATTATCAATGAAGGATTCTTTAGCTGCTGTTTGTAATGCCACACAAGCAGCAGCTCGAATTCATCAAGTTTTTAGGGTTCAGTCGTTCCAAAAGAAGCAGCTAAAAGAGTACGGAAACGATGGTTTTGGTATATCTGATGAGCGTGCTCTTTCACTTCTTGCTGTCAAGAAAAACAAGGCAGGTCAACGAGATGAGCCTGTGCATGCTGCTGCAATTCGTATACAGAATAAATTCCGTAGCTATAAAGGCAGAAAAGACTTTTTGATAATCCGGCAGCGAATTGTTAAAATTCAGGCTCACGTGAGGGGGCATCAGGTGAGGAAGAACTACAAAAAGATAACCTGGTCGGTTGGAATATTGGAGAAGGTAATTTTACGGTGGAGAAGGAAAGGAAGCGGTTTGCGTGGATTCAAGCCAGAGGCAATTACTGAGGGGGGAATGCAAGCCACAACATCGTCGAATGAGGATGAGTATGATTTCCTTAAAGAAGGCAGAAAGCAGACAGAGGAAAGGTTGCAAAAGGCCCTCGCTAGGGTCAAGTCCATGGTTCAGTATCCTGAGGCTAGAGATCAATACCGTAGGTTGCTTAATGTTGTCACAGATATTCAGGAATCCAAGGCTGTGAACGATATGGCTATGACCAGTTCAGAAGAGGTAGCTGATTTTGATGATCTGATTGATCTTCAAGCACTTTTGGATGATGACACTTTCATGTCTTCATCATATAACTAG

Network for GWHGAAZE017004

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03859.17	CG-1	62	175	4.30E-50
PF01833.25	TIG	543	616	1.40E-05
PF12796.8	Ank_2	740	832	2.30E-07
PF00612.28	IQ	947	966	0.069
PF00612.28	IQ	971	990	0.0001

Protein Sequence

>GWHPAAZE017014
MSRPPGSSSSYRGQRGRGGPPRSPARNIGTSGIKSQASSSQGELWRNIVNCICRYIEQILLEAQHRWLRPAEICEILQNYKRFRIAPEPANKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEDNENFQRRSYWLLEEERSHIVLVHYREVKGNRTNYNRVREAEESIPNSVETEETRLNSEVESSVSSKLQPYSYQVTPQTTDTTSLSSAHTTEYEDAESAYNQQPSSSFYSFLEQPPLMGRKDDALSTPYYPAPFPDDYQGKYPPVSETNSVSLAEGDKGKNSSSAGLTYEPWKQLDLQSWENLLQNNTSGIQFAPFQSLLSSAQPDTENILPGRGNEILGQIFTDAFGEKHELGNYPQGEEEWQTSESDASHISKWSLDQKLDTELAYDFTNKFHDAEQNNHGDLQIQLRNVESGNSLKPESESNLTGEKSNYSPLKPPLLSNFMNEGLKKLDSFDRWMSKELGDVNESKVQSSSGSYWEVVGNEDGIDDSSISPQVRLDTYMSPSLSQDQLFSIIDFSPNWASSGANIKVLITGRFLKSQQDLEKCKWACMFGELEVPAEVVADGVLRCHTPDHKPGRVPFYVTCSNRVACSEVREFEFQDTDIQDVDVTDISGGSNEVVLHMRFGKFLSLQSSSSQSSVDPTLSSKISSLLEENDSEWDQMAMFTSELEKVRDRLLQRLLKEKLYAWLLHKAGEGGKGPSVLDEGGQGVLHFAAALGYDWAIEPTIAAGVSINFRDVNGWTALHWAASYGRERTVGFLISLGADPGALTDPTPQYPSGRPPADLASSNGHKGIAGYLAESALSYHLSSLGLKDIKEADGLNNISNLEAVQSVSGRTASPINDGDLPDDRLSMKDSLAAVCNATQAAARIHQVFRVQSFQKKQLKEYGNDGFGISDERALSLLAVKKNKAGQRDEPVHAAAIRIQNKFRSYKGRKDFLIIRQRIVKIQAHVRGHQVRKNYKKITWSVGILEKVILRWRRKGSGLRGFKPEAITEGGMQATTSSNEDEYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVTDIQESKAVNDMAMTSSEEVADFDDLIDLQALLDDDTFMSSSYN

Gene family

Gene family	subfamily
Transcription Factors Family	CAMTA

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.476
	SRR3591706	second leaf	20.450
	SRR3591707	mature leaf	26.530
	SRR3591708	Shoot apex	27.067
	SRR3591709	Stem	41.298
	SRR3591710	White floral bud	28.452
	SRR3591711	White flower	37.813
	SRR3591712	Green floral bud	23.340
	SRR3591713	Yellow flower	26.570
SRP173429	SRR8316895	Juvenile bud stage	14.968
	SRR8316896	Juvenile bud stage	19.391
	SRR8316897	Juvenile bud stage	8.067
	SRR8316894	Third green stage	7.534
	SRR8316900	Third green stage	15.791
	SRR8316901	Third green stage	16.409
	SRR8316898	Complete white stage	8.557
	SRR8316899	Complete white stage	31.306
	SRR8316903	Complete white stage	14.999
	SRR8316902	Silver flowering stage	8.679
	SRR8316904	Silver flowering stage	13.271
	SRR8316905	Silver flowering stage	5.647
	SRR8316906	Gold flowering stage	25.441
	SRR8316907	Gold flowering stage	19.671
	SRR8316908	Gold flowering stage	25.431
SRP132670	SRR6706286	Control	17.542
	SRR6706287	Light intensity 50%	17.287
	SRR6706288	Light intensity 20%	17.488
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.607
	CNS0095593	Slightly white alabastrum(diploid) 2	11.179
	CNS0095594	Slightly white alabastrum(diploid) 3	11.298
	CNS0095595	Whole white alabastrum(diploid) 2	9.875
	CNS0095596	Whole white alabastrum(diploid) 3	6.954
	CNS0095597	Whole white alabastrum(diploid) 4	9.816
	CNS0095598	Silvery flower (diploied) 1	22.869
	CNS0095599	Silvery flower (diploied) 2	16.906
	CNS0095600	Silvery flower (diploied) 3	30.280
	CNS0095601	Golden flower (diploid) 1	20.848
	CNS0095602	Golden flower (diploid) 2	33.851
	CNS0095603	Golden flower (diploid) 3	32.069
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.995
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.519
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.312
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.835
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.423
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.021
	CNS0095610	Silvery flower (tetraploid) 1	26.239
	CNS0095611	Silvery flower (tetraploid) 2	28.763
	CNS0095612	Silvery flower (tetraploid) 3	22.805
	CNS0095613	Golden flower (tetraploid) 1	12.478
	CNS0095614	Golden flower (tetraploid) 2	25.689
	CNS0095615	Golden flower (tetraploid) 3	21.675
CRA001975	CRR073297	Stem 1	22.885
	CRR073298	Stem 2	20.534
	CRR073299	Stem 3	18.932
	CRR073300	Leaf 1	20.075
	CRR073301	Leaf 2	18.533
	CRR073302	Leaf 3	16.354
	CRR073303	Juvenile bud 1	15.023
	CRR073304	Juvenile bud 2	11.498
	CRR073305	Juvenile bud 3	24.897
	CRR073306	Third green 1	5.017
	CRR073307	Third green 2	5.705
	CRR073308	Third green 3	7.543
	CRR073309	Second white 1	8.149
	CRR073310	Second white 2	8.675
	CRR073311	Second white 3	8.438
	CRR073312	Silver flowering 1	7.379
	CRR073313	Silver flowering 2	6.264
	CRR073314	Silver flowering 3	4.210
	CRR073315	Gold flowering 1	15.928
	CRR073316	Gold flowering 2	24.370
	CRR073317	Gold flowering 3	17.338
	CRR073318	Tawny withering 1	20.702
	CRR073319	Tawny withering 2	17.364
	CRR073320	Tawny withering 3	16.871