Gene detail

Detail information of GWHGAAZE016988

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097592.1	0	PREDICTED: probable trehalose-phosphate phosphatase J [Sesamum indicum]
Swissprot	tr\|Q5HZ05\|TPPJ_ARATH	2E-166	Probable trehalose-phosphate phosphatase J
trEMBL	tr\|B9T4H6\|B9T4H6_RICCO	0	Trehalose 6-phosphate phosphatase {ECO:0000256\|RuleBase:RU361117}
TAIR10	AT5G65140.1	5E-127	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	88645745	88649591	+
GWHAAZE00000004	mRNA	88645745	88649591	+
GWHAAZE00000004	exon	88645745	88646032	+
GWHAAZE00000004	exon	88646828	88646968	+
GWHAAZE00000004	exon	88647096	88647167	+
GWHAAZE00000004	exon	88647268	88647360	+
GWHAAZE00000004	exon	88647458	88647514	+
GWHAAZE00000004	exon	88647714	88647815	+
GWHAAZE00000004	exon	88648499	88648568	+
GWHAAZE00000004	exon	88648872	88648942	+
GWHAAZE00000004	exon	88649053	88649145	+
GWHAAZE00000004	exon	88649249	88649591	+
GWHAAZE00000004	CDS	88645745	88646032	+
GWHAAZE00000004	CDS	88646828	88646968	+
GWHAAZE00000004	CDS	88647096	88647167	+
GWHAAZE00000004	CDS	88647268	88647360	+
GWHAAZE00000004	CDS	88647458	88647514	+
GWHAAZE00000004	CDS	88647714	88647815	+
GWHAAZE00000004	CDS	88648499	88648568	+
GWHAAZE00000004	CDS	88648872	88648942	+
GWHAAZE00000004	CDS	88649053	88649145	+
GWHAAZE00000004	CDS	88649249	88649356	+
GWHAAZE00000004	three_prime_UTR	88649357	88649591	+

Transcript Sequence
>GWHTAAZE017008 ATGACGAAGAAAAATGTGGTGGTTTCCGATGCGAAATCGGCGATAGAGATGGCCATAACGGTGGCGGTTTCGAACTCGTCGCTCTTTGCGGCGGCTGTGCAGAAGCCGACGGCCGTAGCCAGCGGTGGCGGAGGGTACATAACCACCATATCGAGGAAGAAATTGCTGCAGAATCTTGAAATAAGTGGGGGTGCAAGAATTAACTCGTGGGTTGATTCAATGAAAGCATCTTCACCAACACATCACAAATCCATGGCTTCTCTCTCTGATGATACTACCTCATGGATGCTTCACCACCCATCAGCCTTGGATATGTTTGAACAAATAACAAGTGCTTCGAAAGGGAAGCAAATTGTAATGTTTCTCGACTACGATGGTACCCTTTCGCCTATCGTGGACGACCCTGATCGCGCTTTTATGTCAGATGCGATGAGATCAACGGTGAGAAAACTTGCTAGATATTTTCCCACTGCTATAGTGAGTGGAAGGTGCAGAGACAAGGTATATAGCTTTGTACGATTAGCAGAGTTGTATTATGCTGGAAGCCATGGTATGGACATTAAAGGACCGTCAAAAGGTTCTAAATACAAGAAAAGTACTAAAACTCTTCTCTGCCAACCAGCCAGCGAATTTCTTCCCATGATCGACGAGGTATACAAGGAACTGCTTGAGAAAACTCAATCCATTCCTGGTGCTAATGTGGAAAATAACAAGTTTTGTGTCTCTGTACATTTTCGTTGTGTTGATGAAAAGGTGTTAGAGATCCGTCCAACTATTAAATGGGACAAGGGGAAGGCTCTTGAATTCTTGTTGGAGTCACTCGGTTATGCCAATTGTACGGATGTCTTTCCTATTTATATTGGAGATGACCGAACAGATGAAGATGCATTTAAGGTACTAAGAGAGAGAGGACAAGGTTTTGGAATTCTTGTTTCAAAAACTCCAAAGGACACGAATGCGTCTTATTCTTTACAAGAACCATCGGAGGTGATGGACTTTTTACGACGATTGGTTGAGTTGAAGAGGCTATCATTGAGAAGGCAATTTAGGTTGCGAAAAAGACTTGAAGGGATAAAAGTATCCCTACCCAATTGATGAGAAATGTTTTTATTGTTGATGCAAGAAATATGTTTTTTAACTTTGTTTAGGGAAAAGGAAATAAAAAAAAAAAGGAAGATGGAGATATGGCCTTTGTTTTTCACTGGGCTTTAATGACTTGTACATCTTGTAACTAGCTGTGTACAAGGGAAAGCAACTGTAATTTGCAAGTTCTAACGAATATATTGCAAGTTATTTCTCTCTCGTTAATGAATGAAATAATTTAAACTGT

Network for GWHGAAZE016988

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02358.17	Trehalose_PPase	121	251	2.10E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01087	otsB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	biological_process	trehalose biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.594
	SRR3591706	second leaf	6.804
	SRR3591707	mature leaf	13.128
	SRR3591708	Shoot apex	7.179
	SRR3591709	Stem	76.812
	SRR3591710	White floral bud	17.085
	SRR3591711	White flower	88.101
	SRR3591712	Green floral bud	1.890
	SRR3591713	Yellow flower	89.329
SRP173429	SRR8316895	Juvenile bud stage	4.823
	SRR8316896	Juvenile bud stage	5.071
	SRR8316897	Juvenile bud stage	3.711
	SRR8316894	Third green stage	2.762
	SRR8316900	Third green stage	4.080
	SRR8316901	Third green stage	4.591
	SRR8316898	Complete white stage	6.655
	SRR8316899	Complete white stage	7.653
	SRR8316903	Complete white stage	11.238
	SRR8316902	Silver flowering stage	72.462
	SRR8316904	Silver flowering stage	54.115
	SRR8316905	Silver flowering stage	16.396
	SRR8316906	Gold flowering stage	48.454
	SRR8316907	Gold flowering stage	54.924
	SRR8316908	Gold flowering stage	67.081
SRP132670	SRR6706286	Control	3.374
	SRR6706287	Light intensity 50%	3.057
	SRR6706288	Light intensity 20%	2.907
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.966
	CNS0095593	Slightly white alabastrum(diploid) 2	8.604
	CNS0095594	Slightly white alabastrum(diploid) 3	9.129
	CNS0095595	Whole white alabastrum(diploid) 2	7.009
	CNS0095596	Whole white alabastrum(diploid) 3	3.664
	CNS0095597	Whole white alabastrum(diploid) 4	5.966
	CNS0095598	Silvery flower (diploied) 1	6.094
	CNS0095599	Silvery flower (diploied) 2	6.336
	CNS0095600	Silvery flower (diploied) 3	47.378
	CNS0095601	Golden flower (diploid) 1	5.473
	CNS0095602	Golden flower (diploid) 2	26.431
	CNS0095603	Golden flower (diploid) 3	23.682
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.452
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.826
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.136
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.895
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.662
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.323
	CNS0095610	Silvery flower (tetraploid) 1	82.746
	CNS0095611	Silvery flower (tetraploid) 2	12.456
	CNS0095612	Silvery flower (tetraploid) 3	4.193
	CNS0095613	Golden flower (tetraploid) 1	11.085
	CNS0095614	Golden flower (tetraploid) 2	16.681
	CNS0095615	Golden flower (tetraploid) 3	18.345
CRA001975	CRR073297	Stem 1	4.307
	CRR073298	Stem 2	3.579
	CRR073299	Stem 3	1.244
	CRR073300	Leaf 1	7.495
	CRR073301	Leaf 2	6.973
	CRR073302	Leaf 3	7.066
	CRR073303	Juvenile bud 1	8.828
	CRR073304	Juvenile bud 2	4.604
	CRR073305	Juvenile bud 3	9.465
	CRR073306	Third green 1	18.793
	CRR073307	Third green 2	27.323
	CRR073308	Third green 3	22.650
	CRR073309	Second white 1	24.818
	CRR073310	Second white 2	18.603
	CRR073311	Second white 3	18.803
	CRR073312	Silver flowering 1	18.140
	CRR073313	Silver flowering 2	14.544
	CRR073314	Silver flowering 3	19.998
	CRR073315	Gold flowering 1	1.005
	CRR073316	Gold flowering 2	2.219
	CRR073317	Gold flowering 3	1.767
	CRR073318	Tawny withering 1	18.938
	CRR073319	Tawny withering 2	25.116
	CRR073320	Tawny withering 3	49.061