Gene detail

Detail information of GWHGAAZE016907

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010089172.1	7-dehydrocholesterol reductase [Morus notabilis]
Swissprot	tr\|Q9LDU6\|ST7R_ARATH	7-dehydrocholesterol reductase
trEMBL	tr\|W9QPT8\|W9QPT8_9ROSA	7-dehydrocholesterol reductase {ECO:0000313\|EMBL:EXB37443.1}
TAIR10	AT1G50430.1	Ergosterol biosynthesis ERG4/ERG24 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	85658882	85670716	+
GWHAAZE00000004	mRNA	85658882	85670716	+
GWHAAZE00000004	exon	85658882	85659027	+
GWHAAZE00000004	exon	85660671	85660893	+
GWHAAZE00000004	exon	85662372	85662427	+
GWHAAZE00000004	exon	85663433	85663535	+
GWHAAZE00000004	exon	85663802	85663867	+
GWHAAZE00000004	exon	85665971	85666084	+
GWHAAZE00000004	exon	85667003	85667129	+
GWHAAZE00000004	exon	85667218	85667318	+
GWHAAZE00000004	exon	85669098	85669223	+
GWHAAZE00000004	exon	85669363	85669427	+
GWHAAZE00000004	exon	85669795	85669876	+
GWHAAZE00000004	exon	85669999	85670081	+
GWHAAZE00000004	exon	85670650	85670716	+
GWHAAZE00000004	CDS	85658882	85659027	+
GWHAAZE00000004	CDS	85660671	85660893	+
GWHAAZE00000004	CDS	85662372	85662427	+
GWHAAZE00000004	CDS	85663433	85663535	+
GWHAAZE00000004	CDS	85663802	85663867	+
GWHAAZE00000004	CDS	85665971	85666084	+
GWHAAZE00000004	CDS	85667003	85667129	+
GWHAAZE00000004	CDS	85667218	85667318	+
GWHAAZE00000004	CDS	85669098	85669223	+
GWHAAZE00000004	CDS	85669363	85669427	+
GWHAAZE00000004	CDS	85669795	85669876	+
GWHAAZE00000004	CDS	85669999	85670081	+
GWHAAZE00000004	CDS	85670650	85670716	+

Transcript Sequence
>GWHTAAZE016927 ATGGTCTTCGCCCAGTCAAGGAAAGACCTCGAAGACGATCCTAGAGGAACAAAAATGGTGGATGCAAAGATGGTGCACTCGCCAATAATCACATACGCATCTATGCTTTCCCTTCTCTCTCTCTGTCCTCCTTTTGTTATTCTCCTATGGTATACAATGGTACATGCTGATGGGTCCATATATCAGACCTTTGATTATCTAAGACAGCATGGGTTGCAGGGATTTATTGATGTTTGGCCAAGACCTACTGCAATTGCTTGGAAAATAATTGCTGCTTATGCAGCATTTGAGGCTGCACTTCAGCTTTTGCTACCGGGTAGGAGGGTGGAGGGACCAATATCCCCTGCTGGCAATAAGCCCATCTATAAGGCAAATGGTTTGGCAGCATATGCGGTGACATTGATCACGTATCTTGGCCTTTGGTGGTTTGGGATATTCAACCCTGCAATCGTGTATGATCATTTGGGAGAAATATTTTCAGCACTCATTTTTGGAAGCTTCATCTTTTGTATTTTGTTATACATTAAAGGTCATGTGGCCCCATCATCCACTGATTCTGGCTCATGCGGAAACGTAATTATTGATTTCTACTGGGGCATGGAGTTGTATCCTCGTATTGGAAAGAACTTTGATATCAAAGTTTTCACGAACTGCAGATTTGGGATGATGTCGTGGGCCGTTCTTGCTGTGACCTATTGCATAAAGCAGTACGAAGCAAATGGGGAAGTGGCTGATTCCATGCTTGTAAATACTGCTCTGATGCTGATTTACGTTACAAAATTTTTTTGGTGGGAAGCTGGATACTGGAATACTATGGATATTGCCCATGATCGAGCCGGGTTTTATATATGTTGGGGATGCTTGGTCTGGGTTCCATCTATCTATACTTCTCCTGGCATGTACCTGGTCAATCATCCAATTAATCTTGGAATTCAGCTTTCTCTTTATATTCTTGTAGCAGGCATTTTATGCATATACATCAACTATGACTGTGACCGCCAACGGCAAGAATTTCGCAGAACAAATGGCAAGTGCTTGATTTGGGGGAAGGCACCATCTAAGATTGTTGCCTCGTACACTACTACTTCTGGTGAGACAAAAAGTAGCCTTCTCTTGACCTCAGGATGGTGGGGCTTATCTCGTCATTTCCATTATGTACCCGAAATATCAGCTGCTTTTTTCTGGACAGTACCGGCTCTTTTTAACCATTTTCTTCCTTATTTCTATGTGGTGTTCCTTACCATCCTGCTCCTCGACCGAGCCAAAAGGGATGATGATAGATGTCGATCAAAGTACGGGAAATACTGGAAATTATATTGCGAGAAGGTTCCCTACAGAATTTTACCTGGCATCTACTGA

Network for GWHGAAZE016907

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01222.18	ERG4_ERG24	75	452	9.10E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00213	DHCR7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016020	cellular_component	membrane
GO:0016628	molecular_function	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	118.531
	SRR3591706	second leaf	61.191
	SRR3591707	mature leaf	63.899
	SRR3591708	Shoot apex	61.475
	SRR3591709	Stem	80.447
	SRR3591710	White floral bud	66.992
	SRR3591711	White flower	59.254
	SRR3591712	Green floral bud	113.671
	SRR3591713	Yellow flower	24.445
SRP173429	SRR8316895	Juvenile bud stage	58.318
	SRR8316896	Juvenile bud stage	78.108
	SRR8316897	Juvenile bud stage	40.059
	SRR8316894	Third green stage	31.364
	SRR8316900	Third green stage	97.918
	SRR8316901	Third green stage	97.744
	SRR8316898	Complete white stage	27.210
	SRR8316899	Complete white stage	172.316
	SRR8316903	Complete white stage	36.961
	SRR8316902	Silver flowering stage	8.913
	SRR8316904	Silver flowering stage	10.226
	SRR8316905	Silver flowering stage	5.038
	SRR8316906	Gold flowering stage	11.750
	SRR8316907	Gold flowering stage	13.011
	SRR8316908	Gold flowering stage	14.424
SRP132670	SRR6706286	Control	140.507
	SRR6706287	Light intensity 50%	134.868
	SRR6706288	Light intensity 20%	149.587
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	78.474
	CNS0095593	Slightly white alabastrum(diploid) 2	87.086
	CNS0095594	Slightly white alabastrum(diploid) 3	68.060
	CNS0095595	Whole white alabastrum(diploid) 2	69.326
	CNS0095596	Whole white alabastrum(diploid) 3	79.048
	CNS0095597	Whole white alabastrum(diploid) 4	70.390
	CNS0095598	Silvery flower (diploied) 1	60.559
	CNS0095599	Silvery flower (diploied) 2	60.240
	CNS0095600	Silvery flower (diploied) 3	46.853
	CNS0095601	Golden flower (diploid) 1	53.258
	CNS0095602	Golden flower (diploid) 2	53.455
	CNS0095603	Golden flower (diploid) 3	50.917
	CNS0095604	Slightly white alabastrum(tetraploid) 1	81.848
	CNS0095605	Slightly white alabastrum(tetraploid) 2	76.128
	CNS0095606	Slightly white alabastrum(tetraploid) 3	140.014
	CNS0095607	Whole white alabastrum(tetraploid) 1	54.654
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.345
	CNS0095609	Whole white alabastrum(tetraploid) 3	109.690
	CNS0095610	Silvery flower (tetraploid) 1	48.195
	CNS0095611	Silvery flower (tetraploid) 2	59.435
	CNS0095612	Silvery flower (tetraploid) 3	30.820
	CNS0095613	Golden flower (tetraploid) 1	12.698
	CNS0095614	Golden flower (tetraploid) 2	32.166
	CNS0095615	Golden flower (tetraploid) 3	5.920
CRA001975	CRR073297	Stem 1	55.049
	CRR073298	Stem 2	57.328
	CRR073299	Stem 3	57.939
	CRR073300	Leaf 1	69.658
	CRR073301	Leaf 2	60.386
	CRR073302	Leaf 3	74.041
	CRR073303	Juvenile bud 1	70.237
	CRR073304	Juvenile bud 2	67.350
	CRR073305	Juvenile bud 3	93.282
	CRR073306	Third green 1	6.032
	CRR073307	Third green 2	7.416
	CRR073308	Third green 3	6.275
	CRR073309	Second white 1	4.644
	CRR073310	Second white 2	1.806
	CRR073311	Second white 3	1.582
	CRR073312	Silver flowering 1	1.063
	CRR073313	Silver flowering 2	2.696
	CRR073314	Silver flowering 3	0.952
	CRR073315	Gold flowering 1	39.126
	CRR073316	Gold flowering 2	67.275
	CRR073317	Gold flowering 3	69.414
	CRR073318	Tawny withering 1	75.648
	CRR073319	Tawny withering 2	57.990
	CRR073320	Tawny withering 3	74.502