Gene detail

Detail information of GWHGAAZE016906

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007048236.1	3.6166E-172	Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
Swissprot	tr\|Q39117\|TGT2_ARATH	5E-116	Trihelix transcription factor GT-2
trEMBL	tr\|A0A061DR08\|A0A061DR08_THECC	1E-172	Duplicated homeodomain-like superfamily protein, putative {ECO:0000313\|EMBL:EOX92393.1}
TAIR10	AT1G76880.1	3E-88	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	85636575	85638623	+
GWHAAZE00000004	mRNA	85636575	85638623	+
GWHAAZE00000004	exon	85636575	85636792	+
GWHAAZE00000004	exon	85637405	85638623	+
GWHAAZE00000004	CDS	85636575	85636792	+
GWHAAZE00000004	CDS	85637405	85638623	+

Transcript Sequence
>GWHTAAZE016926 ATGGTAGAAGGCTCGGTGTTGCCGGAGAATTGTGGTTCCGGCGGCAGAGAAAACACGGTCGCCGTCGTGAATAGCGGTGGAGAGGAAGGTGACCGGAGCTCCGGAGTTAACCGGTGGCCTCGTGAAGAGACTCTGGCTCTGTTGAAGATAAGGTCCGATATGGACGTTGATTTTCGTGATTCTAATCTCAAAGGAGCTCTTTGGGATGATGTTTCTAGGAAATTAGGTGAACTTGGGTACCATCGAAGCGCCAAAAAATGCAGAGAGAAATTCGAGAACATTTATAAATACCACAAGAGAACTAAAGAGGGTAGATCCGGCCGTCAAAACGGCAAAAATTACCGATTTTTTGACCAATTAGAGGTTTTTGACCATCATTCATCCTCTCTTCCATCGCCTCCTCTAGACAAAACCAATCAAAATTTTACAGCAGAAAGAACAATGGCTGTAACAAATTTATCTATAAAACCTGCGAATGTTACTGAAGAAAATATTGTTAAAAACCCGAGTTGTGGATTCATGTCCACCTCCACCTCGGCCACGTCGAATTCTAGCAAGGAATCGGCAGGGGATACCAAAAAGAAGAGGAAACTTGAGGCTTATTTTGAGTCTTTGATGAAGGAAGTGCTTGAGAAGCAAGAGAGTTTGCAGAACAAGTTCATTGAGGCGATAGAAAAGAGCGAGATGGAAAGGGCGGCTAGAGAAGAGGCATGGAAGATGCAAGAAATGGCTCGAGCGAAGAAGGAGAAAGAGATTCTTGCCCAAGAAAGGGCAGTCTCGGCTGCAAAAGATGCAGCCGTGATCGCATTTCTTCAAAAGATTTCGGATCAAGCGAACCCGTTAGTGCAGTTGCAAGAGAATCGAGTTCCGATCGAGAAGAATGTAGAGAAGCATTTGTTTGGTATTGGTAATGGCAATGGTACAAGTTCATCAAGGTGGCCTAGAGTTGAGGTTGAGGATTTGATTAGGCTAAGGACTAATCTTGATTATCAAGACAATGGGGCAAAAGGGTCTTTGTGGGAGGAGATTTCATCGGCGATGAAGAAGCTTGGGTATGATAGAAGTGCAAAGAGATGTAAAGAGAAGTGGGAGAATATAAACAAGTATTACAAGAGAGTGAAAGAGAGTAACAAGAAAAGGCCTGAAGATTCAAAGACGTGCCCTTATTTTCATATGCTTGAGAGTATATATGAGATGAAGTCAAAGAAGGGGGATGGGTCTGGTTGTAATTTGAAGGCTGAGGATATTTTGATGCAAATGATGGGGCACCAACAACAAGAGCAATCAATGACTGATAACGGCGAGAGTGAAAATGCCGATCAAAATGAAGAAGAAGATGGTGAAGAAGAAAATGATGATGATGATAATGGAGATGATTACCAAGTTGTTGTTAATAATAATAATAATACTTCTTCAACAATGGCAACAATAGAGTGA

Network for GWHGAAZE016906

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.7	Myb_DNA-bind_4	37	121	1.00E-18
PF13837.7	Myb_DNA-bind_4	311	396	2.20E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.002
	SRR3591706	second leaf	9.855
	SRR3591707	mature leaf	27.317
	SRR3591708	Shoot apex	9.645
	SRR3591709	Stem	19.029
	SRR3591710	White floral bud	11.471
	SRR3591711	White flower	21.841
	SRR3591712	Green floral bud	7.913
	SRR3591713	Yellow flower	15.530
SRP173429	SRR8316895	Juvenile bud stage	3.945
	SRR8316896	Juvenile bud stage	5.253
	SRR8316897	Juvenile bud stage	1.648
	SRR8316894	Third green stage	2.462
	SRR8316900	Third green stage	5.191
	SRR8316901	Third green stage	4.806
	SRR8316898	Complete white stage	2.546
	SRR8316899	Complete white stage	10.815
	SRR8316903	Complete white stage	7.632
	SRR8316902	Silver flowering stage	2.899
	SRR8316904	Silver flowering stage	4.007
	SRR8316905	Silver flowering stage	1.382
	SRR8316906	Gold flowering stage	5.680
	SRR8316907	Gold flowering stage	7.186
	SRR8316908	Gold flowering stage	9.574
SRP132670	SRR6706286	Control	7.285
	SRR6706287	Light intensity 50%	5.251
	SRR6706288	Light intensity 20%	6.034
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.171
	CNS0095593	Slightly white alabastrum(diploid) 2	4.584
	CNS0095594	Slightly white alabastrum(diploid) 3	3.746
	CNS0095595	Whole white alabastrum(diploid) 2	4.232
	CNS0095596	Whole white alabastrum(diploid) 3	2.976
	CNS0095597	Whole white alabastrum(diploid) 4	4.254
	CNS0095598	Silvery flower (diploied) 1	17.256
	CNS0095599	Silvery flower (diploied) 2	7.936
	CNS0095600	Silvery flower (diploied) 3	9.764
	CNS0095601	Golden flower (diploid) 1	9.559
	CNS0095602	Golden flower (diploid) 2	18.851
	CNS0095603	Golden flower (diploid) 3	16.008
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.089
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.841
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.777
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.108
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.492
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.767
	CNS0095610	Silvery flower (tetraploid) 1	12.268
	CNS0095611	Silvery flower (tetraploid) 2	10.378
	CNS0095612	Silvery flower (tetraploid) 3	7.982
	CNS0095613	Golden flower (tetraploid) 1	10.364
	CNS0095614	Golden flower (tetraploid) 2	20.374
	CNS0095615	Golden flower (tetraploid) 3	4.578
CRA001975	CRR073297	Stem 1	6.266
	CRR073298	Stem 2	7.474
	CRR073299	Stem 3	6.598
	CRR073300	Leaf 1	5.097
	CRR073301	Leaf 2	5.755
	CRR073302	Leaf 3	4.142
	CRR073303	Juvenile bud 1	3.020
	CRR073304	Juvenile bud 2	1.715
	CRR073305	Juvenile bud 3	3.940
	CRR073306	Third green 1	0.554
	CRR073307	Third green 2	0.298
	CRR073308	Third green 3	1.122
	CRR073309	Second white 1	0.555
	CRR073310	Second white 2	0.893
	CRR073311	Second white 3	0.733
	CRR073312	Silver flowering 1	3.210
	CRR073313	Silver flowering 2	2.230
	CRR073314	Silver flowering 3	3.175
	CRR073315	Gold flowering 1	15.902
	CRR073316	Gold flowering 2	31.953
	CRR073317	Gold flowering 3	7.433
	CRR073318	Tawny withering 1	21.921
	CRR073319	Tawny withering 2	20.943
	CRR073320	Tawny withering 3	12.559