Gene detail

Detail information of GWHGAAZE016892

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO62049.1	2.86151E-94	hypothetical protein CISIN_1g0025641mg, partial [Citrus sinensis]
trEMBL	tr\|A0A067F3T2\|A0A067F3T2_CITSI	1E-94	Uncharacterized protein {ECO:0000313\|EMBL:KDO62049.1} (Fragment)
TAIR10	AT4G04940.1	2E-52	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	85078004	85080809	+
GWHAAZE00000004	mRNA	85078004	85080809	+
GWHAAZE00000004	exon	85078004	85078264	+
GWHAAZE00000004	exon	85078996	85079218	+
GWHAAZE00000004	exon	85079345	85079566	+
GWHAAZE00000004	exon	85080673	85080809	+
GWHAAZE00000004	CDS	85078004	85078264	+
GWHAAZE00000004	CDS	85078996	85079218	+
GWHAAZE00000004	CDS	85079345	85079566	+
GWHAAZE00000004	CDS	85080673	85080809	+

Transcript Sequence
>GWHTAAZE016912 ATGTTTTCTGGAGCATCTGCTGTGGATTCTTATGGAAGTGGAAAGGATATTTTGAGCGTTAAGTTGCCGTCTGTTTCTTCAATAGAAGTTTCTTCTAAAGATGATATTGATTTTGATGTCAAACCCATTGTGAGCAACTCACAATTCCAAGATACTACTACTTGCGTTTCACATTTGGATCAACAAATCCCAGATCTAGTCACCCTTTCACTATTACCGAAGAGCCAGTGGCAAGGGTTGATCAATTTAGACGTTATAAAGGCTCGAAACAAGCCAATTGAGCCTCCGAAAAAACCCGAGAAAGTGCCCTTCTTCTTGCCTTCCATTCCATCTCTATCCGGAGAAGTATTGTTTAAAGCTAGCGAACCCACTAATGAAGACAAGGGAATTCAAACTACTGATGAATTGGAAAAAAGGAGAAAACCCGATAATCTTGCATCTCAGTTCTTGCAATTTCTCCACTCCTCTGCAGAGATGAATAATTTTTCGGGATTCACTGATTATTTGCAAAGTCTATCTTCGTCGACATTGGATATGGAATTTCGAATGCTTCAGATTATAGATGATGATGATGATGCTCAAGAGGCGGAGAAAAGACCCGAGTTGTATTCTATTGAACTTTTGCTGGATTATTTTATACACGAGATTTCATGTAGAAACAATTACGAGTTCATACAAGCTCTCGTCAGATTGTTTTTAAAGGTATATTCATGGAGAAACGATCAGAAGGCAGTCAAAGATACAGGAGAAGGCGCGAAAGCTTCTAGAAGTTCAGTGTGGGGTATGGCAAAGATTAGATGGATTGCTTCAGAGCGGTCGATGCAAACTTACTTTCCTCAGTAA

Network for GWHGAAZE016892

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04192.13	Utp21	54	236	8.10E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14554	UTP21, WDR36	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0006364	biological_process	rRNA processing
GO:0032040	cellular_component	small-subunit processome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.672
	SRR3591706	second leaf	2.333
	SRR3591707	mature leaf	2.291
	SRR3591708	Shoot apex	10.579
	SRR3591709	Stem	5.138
	SRR3591710	White floral bud	3.307
	SRR3591711	White flower	9.220
	SRR3591712	Green floral bud	8.631
	SRR3591713	Yellow flower	2.860
SRP173429	SRR8316895	Juvenile bud stage	8.525
	SRR8316896	Juvenile bud stage	10.538
	SRR8316897	Juvenile bud stage	7.185
	SRR8316894	Third green stage	3.199
	SRR8316900	Third green stage	9.065
	SRR8316901	Third green stage	7.114
	SRR8316898	Complete white stage	0.715
	SRR8316899	Complete white stage	4.044
	SRR8316903	Complete white stage	1.106
	SRR8316902	Silver flowering stage	2.221
	SRR8316904	Silver flowering stage	2.934
	SRR8316905	Silver flowering stage	1.532
	SRR8316906	Gold flowering stage	2.604
	SRR8316907	Gold flowering stage	4.394
	SRR8316908	Gold flowering stage	4.976
SRP132670	SRR6706286	Control	0.718
	SRR6706287	Light intensity 50%	0.368
	SRR6706288	Light intensity 20%	0.886
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.391
	CNS0095593	Slightly white alabastrum(diploid) 2	7.639
	CNS0095594	Slightly white alabastrum(diploid) 3	7.988
	CNS0095595	Whole white alabastrum(diploid) 2	6.067
	CNS0095596	Whole white alabastrum(diploid) 3	8.802
	CNS0095597	Whole white alabastrum(diploid) 4	5.046
	CNS0095598	Silvery flower (diploied) 1	6.282
	CNS0095599	Silvery flower (diploied) 2	3.855
	CNS0095600	Silvery flower (diploied) 3	3.267
	CNS0095601	Golden flower (diploid) 1	4.789
	CNS0095602	Golden flower (diploid) 2	2.543
	CNS0095603	Golden flower (diploid) 3	2.253
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.921
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.500
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.087
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.482
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.824
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.973
	CNS0095610	Silvery flower (tetraploid) 1	4.818
	CNS0095611	Silvery flower (tetraploid) 2	5.323
	CNS0095612	Silvery flower (tetraploid) 3	3.613
	CNS0095613	Golden flower (tetraploid) 1	3.044
	CNS0095614	Golden flower (tetraploid) 2	4.719
	CNS0095615	Golden flower (tetraploid) 3	2.109
CRA001975	CRR073297	Stem 1	2.455
	CRR073298	Stem 2	2.127
	CRR073299	Stem 3	2.441
	CRR073300	Leaf 1	2.591
	CRR073301	Leaf 2	2.024
	CRR073302	Leaf 3	0.074
	CRR073303	Juvenile bud 1	0.597
	CRR073304	Juvenile bud 2	0.266
	CRR073305	Juvenile bud 3	1.221
	CRR073306	Third green 1	0.019
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.007
	CRR073309	Second white 1	0.984
	CRR073310	Second white 2	0.892
	CRR073311	Second white 3	0.248
	CRR073312	Silver flowering 1	0.155
	CRR073313	Silver flowering 2	0.192
	CRR073314	Silver flowering 3	0.420
	CRR073315	Gold flowering 1	1.223
	CRR073316	Gold flowering 2	4.656
	CRR073317	Gold flowering 3	1.588
	CRR073318	Tawny withering 1	2.783
	CRR073319	Tawny withering 2	3.894
	CRR073320	Tawny withering 3	4.060