Gene detail

Detail information of GWHGAAZE016879

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006382856.1	hypothetical protein POPTR_0005s06140g [Populus trichocarpa]
Swissprot	tr\|P48977\|ADH_MALDO	Alcohol dehydrogenase
trEMBL	tr\|U5GAV5\|U5GAV5_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:ERP60653.1}
TAIR10	AT1G77120.1	alcohol dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	84818372	84821644	+
GWHAAZE00000004	mRNA	84818372	84821644	+
GWHAAZE00000004	exon	84818372	84818527	+
GWHAAZE00000004	exon	84818691	84818737	+
GWHAAZE00000004	exon	84819145	84819470	+
GWHAAZE00000004	exon	84819730	84819800	+
GWHAAZE00000004	exon	84819896	84819971	+
GWHAAZE00000004	exon	84820226	84820287	+
GWHAAZE00000004	exon	84820398	84820493	+
GWHAAZE00000004	exon	84820593	84820754	+
GWHAAZE00000004	exon	84821340	84821644	+
GWHAAZE00000004	CDS	84818372	84818527	+
GWHAAZE00000004	CDS	84818691	84818737	+
GWHAAZE00000004	CDS	84819145	84819470	+
GWHAAZE00000004	CDS	84819730	84819800	+
GWHAAZE00000004	CDS	84819896	84819971	+
GWHAAZE00000004	CDS	84820226	84820287	+
GWHAAZE00000004	CDS	84820398	84820493	+
GWHAAZE00000004	CDS	84820593	84820754	+
GWHAAZE00000004	CDS	84821340	84821456	+
GWHAAZE00000004	three_prime_UTR	84821457	84821644	+

Transcript Sequence
>GWHTAAZE016899 ATGCATGCACTCATTACAGCTGCGGTGGCATGGGAAGCTGGAAAGCCACTAGTGATAGAAGAGGTGGAGGTGGCGCCTCCTCAAGCCATGGAGGTTCGCGTGAAAATCCTCTTCACCTCCCTCTGCCACACCGACGTTTACTTTTGGGAAGCCAAGGGACAAACCCCCATGTTTCCTCGCATATTTGGGCATGAAGCTGGAGGGATTGTGGAGAGCATTGGTGAGGGTGTAACGGATTTGAAACCCGGGGATCATGTTCTTCCAGTATTCACGGGAGAGTGCAAAGAGTGTCGACATTGCAAGTCGGAGGAGAGTAATATGTGTGATCTCTTGAGGATAAACACGGACCGTGGGGTGATGTTAAATGATGGCAAGTCAAGGTTCTCGATCAACGGTGAACCCATTTTCCATTTTGTTGGAACCTCCACGTTTAGTGAATACACTGTGGTTCACGTTGGTTGTCTTGCGAAGATCAACCCTGCTGCTCCACTTGACAAAGTTTGCGTTCTTAGTTGTGGAATTTCTACAGGTCTTGGTGCCACTTTGAATGTCGCAAAACCGAAAAAAGGTTCAACCGTAGCCATTTTTGGACTTGGAGCTGCTGCTGAAGGGGCTAGAATTTCTGGTGCTTCAAGGATTATTGGAGTTGATCTGAATTCAAACAGATTTGAAGCATCAAAGAAATTTGGAATCACGGAGTTTGTCAACCCGAAAGAACATGACAAGCCTGTTCAAGAGGTGATTGCTGAGATGACTGACGGCGGAGTTGACCGAAGTGTAGAGTGTACCGGTAGTATAAGTGCGATGATCTCTGCGTTTGAATGCGTTCATGATGGATGGGGAGTTGCTGTGCTTGTGGGGGTGCCAAACAAAGATGACGCATTCAAAACGCATCCAATGAATCTGTTGAATGAAAGAACTCTGAAGGGCACCTTCTTCGGCAACTATAAGCCACGGTCCGACATTCCCTCGGTTGTGGAAAAATACATGAACAAGGAGCTTGAACTGGAAAAATTCATCACACATGAAGTCCCATTCTCAGAAATAAACAAGGCCTTTGAGTTTATGCTAAAAGGGGATGGCCTCAGGTGCATTATTCGCATGGATGGTTAAGTGCTGTTTGGGTATCAAGAAGAGATTGTTAATCCAGTTGGTCACGTTGAGTCTTTAAATAAACTCTGTGTTCATGTGTTTTTTCTTTTTGCTTTTGTTTCAAGTGAGGAAGATGGTGTTCTGTCTTGCGTATGTGCATATAAAAAAGAGGCCTGTCCCTTAATTAATAAACATGTTTTTGTACAGTA

Network for GWHGAAZE016879

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	31	153	5.50E-23
PF00107.27	ADH_zinc_N	200	324	6.30E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18857	ADH1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Fatty acid degradation	map00071
		alpha-Linolenic acid metabolism	map00592
		Tyrosine metabolism	map00350

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0008270	molecular_function	zinc ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.120
	SRR3591706	second leaf	9.049
	SRR3591707	mature leaf	9.686
	SRR3591708	Shoot apex	16.996
	SRR3591709	Stem	55.899
	SRR3591710	White floral bud	15.060
	SRR3591711	White flower	16.655
	SRR3591712	Green floral bud	19.436
	SRR3591713	Yellow flower	5.854
SRP173429	SRR8316895	Juvenile bud stage	13.984
	SRR8316896	Juvenile bud stage	23.186
	SRR8316897	Juvenile bud stage	16.415
	SRR8316894	Third green stage	13.953
	SRR8316900	Third green stage	45.583
	SRR8316901	Third green stage	34.598
	SRR8316898	Complete white stage	25.419
	SRR8316899	Complete white stage	66.962
	SRR8316903	Complete white stage	26.763
	SRR8316902	Silver flowering stage	28.634
	SRR8316904	Silver flowering stage	47.703
	SRR8316905	Silver flowering stage	19.421
	SRR8316906	Gold flowering stage	40.821
	SRR8316907	Gold flowering stage	52.028
	SRR8316908	Gold flowering stage	55.396
SRP132670	SRR6706286	Control	56.472
	SRR6706287	Light intensity 50%	60.155
	SRR6706288	Light intensity 20%	75.058
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.363
	CNS0095593	Slightly white alabastrum(diploid) 2	25.079
	CNS0095594	Slightly white alabastrum(diploid) 3	20.638
	CNS0095595	Whole white alabastrum(diploid) 2	24.487
	CNS0095596	Whole white alabastrum(diploid) 3	30.266
	CNS0095597	Whole white alabastrum(diploid) 4	34.739
	CNS0095598	Silvery flower (diploied) 1	55.188
	CNS0095599	Silvery flower (diploied) 2	41.208
	CNS0095600	Silvery flower (diploied) 3	43.559
	CNS0095601	Golden flower (diploid) 1	35.113
	CNS0095602	Golden flower (diploid) 2	46.690
	CNS0095603	Golden flower (diploid) 3	50.697
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.296
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.306
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.979
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.932
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.270
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.611
	CNS0095610	Silvery flower (tetraploid) 1	36.176
	CNS0095611	Silvery flower (tetraploid) 2	33.505
	CNS0095612	Silvery flower (tetraploid) 3	23.419
	CNS0095613	Golden flower (tetraploid) 1	57.627
	CNS0095614	Golden flower (tetraploid) 2	36.744
	CNS0095615	Golden flower (tetraploid) 3	24.262
CRA001975	CRR073297	Stem 1	62.429
	CRR073298	Stem 2	67.496
	CRR073299	Stem 3	63.846
	CRR073300	Leaf 1	89.112
	CRR073301	Leaf 2	77.282
	CRR073302	Leaf 3	128.186
	CRR073303	Juvenile bud 1	141.428
	CRR073304	Juvenile bud 2	67.190
	CRR073305	Juvenile bud 3	120.107
	CRR073306	Third green 1	15.105
	CRR073307	Third green 2	19.040
	CRR073308	Third green 3	19.979
	CRR073309	Second white 1	8.215
	CRR073310	Second white 2	7.535
	CRR073311	Second white 3	5.392
	CRR073312	Silver flowering 1	4.300
	CRR073313	Silver flowering 2	10.191
	CRR073314	Silver flowering 3	14.259
	CRR073315	Gold flowering 1	11.654
	CRR073316	Gold flowering 2	12.242
	CRR073317	Gold flowering 3	12.818
	CRR073318	Tawny withering 1	243.361
	CRR073319	Tawny withering 2	163.526
	CRR073320	Tawny withering 3	297.943